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Deep generative modeling for single-cell transcriptomics.
Lopez R, Regier J, Cole MB, Jordan MI, Yosef N. Lopez R, et al. Nat Methods. 2018 Dec;15(12):1053-1058. doi: 10.1038/s41592-018-0229-2. Epub 2018 Nov 30. Nat Methods. 2018. PMID: 30504886 Free PMC article.
A Python library for probabilistic analysis of single-cell omics data.
Gayoso A, Lopez R, Xing G, Boyeau P, Valiollah Pour Amiri V, Hong J, Wu K, Jayasuriya M, Mehlman E, Langevin M, Liu Y, Samaran J, Misrachi G, Nazaret A, Clivio O, Xu C, Ashuach T, Gabitto M, Lotfollahi M, Svensson V, da Veiga Beltrame E, Kleshchevnikov V, Talavera-López C, Pachter L, Theis FJ, Streets A, Jordan MI, Regier J, Yosef N. Gayoso A, et al. Among authors: lopez r. Nat Biotechnol. 2022 Feb;40(2):163-166. doi: 10.1038/s41587-021-01206-w. Nat Biotechnol. 2022. PMID: 35132262 No abstract available.
DestVI identifies continuums of cell types in spatial transcriptomics data.
Lopez R, Li B, Keren-Shaul H, Boyeau P, Kedmi M, Pilzer D, Jelinski A, Yofe I, David E, Wagner A, Ergen C, Addadi Y, Golani O, Ronchese F, Jordan MI, Amit I, Yosef N. Lopez R, et al. Nat Biotechnol. 2022 Sep;40(9):1360-1369. doi: 10.1038/s41587-022-01272-8. Epub 2022 Apr 21. Nat Biotechnol. 2022. PMID: 35449415 Free PMC article.
Defining and benchmarking open problems in single-cell analysis.
Luecken MD, Gigante S, Burkhardt DB, Cannoodt R, Strobl DC, Markov NS, Zappia L, Palla G, Lewis W, Dimitrov D, Vinyard ME, Magruder DS, Andersson A, Dann E, Qin Q, Otto DJ, Klein M, Botvinnik OB, Deconinck L, Waldrant K; Open Problems Jamboree Members; Bloom JM, Pisco AO, Saez-Rodriguez J, Wulsin D, Pinello L, Saeys Y, Theis FJ, Krishnaswamy S. Luecken MD, et al. Res Sq [Preprint]. 2024 Apr 4:rs.3.rs-4181617. doi: 10.21203/rs.3.rs-4181617/v1. Res Sq. 2024. PMID: 38645152 Free PMC article. Preprint.
ZFYVE21 promotes endothelial nitric oxide signaling and vascular barrier function in the kidney during aging.
Jiang Q, Song G, He L, Li X, Jiang B, Wang Q, Wang S, Kim C, Barkestani MN, Lopez R, Fan M, Wanniarachchi K, Quaranta M, Tian X, Mani A, Gonzalez A, Goodwin JE, Sessa WC, Ishibe S, Jane-Wit D. Jiang Q, et al. Among authors: lopez r. Kidney Int. 2024 May 24:S0085-2538(24)00342-9. doi: 10.1016/j.kint.2024.05.007. Online ahead of print. Kidney Int. 2024. PMID: 38797325 Free article.
3,660 results