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Exploring plant cis-regulatory elements at single-cell resolution: overcoming biological and computational challenges to advance plant research.
Plant J. 2023 Sep;115(6):1486-1499. doi: 10.1111/tpj.16351. Epub 2023 Jun 28.
Plant J. 2023.
PMID: 37309871
Review.
Leveraging histone modifications to improve genome annotations.
Mendieta JP, Marand AP, Ricci WA, Zhang X, Schmitz RJ.
Mendieta JP, et al.
G3 (Bethesda). 2021 Sep 27;11(10):jkab263. doi: 10.1093/g3journal/jkab263.
G3 (Bethesda). 2021.
PMID: 34568920
Free PMC article.
Item in Clipboard
Simple and accurate transcriptional start site identification using Smar2C2 and examination of conserved promoter features.
Murray A, Mendieta JP, Vollmers C, Schmitz RJ.
Murray A, et al. Among authors: mendieta jp.
Plant J. 2022 Oct;112(2):583-596. doi: 10.1111/tpj.15957. Epub 2022 Oct 2.
Plant J. 2022.
PMID: 36030508
Free PMC article.
Item in Clipboard
Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet.
Yan H, Sun M, Zhang Z, Jin Y, Zhang A, Lin C, Wu B, He M, Xu B, Wang J, Qin P, Mendieta JP, Nie G, Wang J, Jones CS, Feng G, Srivastava RK, Zhang X, Bombarely A, Luo D, Jin L, Peng Y, Wang X, Ji Y, Tian S, Huang L.
Yan H, et al. Among authors: mendieta jp.
Nat Genet. 2023 Mar;55(3):507-518. doi: 10.1038/s41588-023-01302-4. Epub 2023 Mar 2.
Nat Genet. 2023.
PMID: 36864101
Free PMC article.
Item in Clipboard
Evolution of plant cell-type-specific cis -regulatory elements.
Yan H, Mendieta JP, Zhang X, Marand AP, Liang Y, Luo Z, Minow MAA, Roulé T, Wagner D, Tu X, Wang Y, Zhong S, Wessler SR, Schmitz RJ.
Yan H, et al. Among authors: mendieta jp.
bioRxiv [Preprint]. 2024 Feb 14:2024.01.08.574753. doi: 10.1101/2024.01.08.574753.
bioRxiv. 2024.
PMID: 38260561
Free PMC article.
Preprint.
Item in Clipboard
Investigating the cis-Regulatory Basis of C3 and C4 Photosynthesis in Grasses at Single-Cell Resolution.
Mendieta JP, Tu X, Jiang D, Yan H, Zhang X, Marand AP, Zhong S, Schmitz RJ.
Mendieta JP, et al.
bioRxiv [Preprint]. 2024 May 16:2024.01.05.574340. doi: 10.1101/2024.01.05.574340.
bioRxiv. 2024.
PMID: 38405933
Free PMC article.
Preprint.
Item in Clipboard
Genetics of alternative splicing evolution during sunflower domestication.
Smith CCR, Tittes S, Mendieta JP, Collier-Zans E, Rowe HC, Rieseberg LH, Kane NC.
Smith CCR, et al. Among authors: mendieta jp.
Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6768-6773. doi: 10.1073/pnas.1803361115. Epub 2018 Jun 11.
Proc Natl Acad Sci U S A. 2018.
PMID: 29891718
Free PMC article.
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