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When will RNA get its AlphaFold moment?
Schneider B, Sweeney BA, Bateman A, Cerny J, Zok T, Szachniuk M. Schneider B, et al. Nucleic Acids Res. 2023 Oct 13;51(18):9522-9532. doi: 10.1093/nar/gkad726. Nucleic Acids Res. 2023. PMID: 37702120 Free PMC article.
DNATCO: assignment of DNA conformers at dnatco.org.
Černý J, Božíková P, Schneider B. Černý J, et al. Among authors: schneider b. Nucleic Acids Res. 2016 Jul 8;44(W1):W284-7. doi: 10.1093/nar/gkw381. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27150812 Free PMC article.
Bioinformatic analysis of the protein/DNA interface.
Schneider B, Cerný J, Svozil D, Cech P, Gelly JC, de Brevern AG. Schneider B, et al. Nucleic Acids Res. 2014 Mar;42(5):3381-94. doi: 10.1093/nar/gkt1273. Epub 2013 Dec 11. Nucleic Acids Res. 2014. PMID: 24335080 Free PMC article.
., 41:271-287)] and dinucleotide conformers [Svozil, Kalina, Omelka and Schneider (2008) (DNA conformations and their sequence preferences. ...The generally known induction of A-DNA forms by complexation was more accurately attributed to A-like and intermediate A/B …
., 41:271-287)] and dinucleotide conformers [Svozil, Kalina, Omelka and Schneider (2008) (DNA conformations and their sequence prefer …
Conformation-based refinement of 18-mer DNA structures.
Svoboda J, Berdár D, Kolenko P, Černý J, Nováková Z, Pavlíček J, Schneider B. Svoboda J, et al. Among authors: schneider b. Acta Crystallogr D Struct Biol. 2023 Jul 1;79(Pt 7):655-665. doi: 10.1107/S2059798323004679. Epub 2023 Jun 20. Acta Crystallogr D Struct Biol. 2023. PMID: 37338420 Free PMC article.
A DNA structural alphabet provides new insight into DNA flexibility.
Schneider B, Boǽíková P, Nečasová I, Čech P, Svozil D, Černý J. Schneider B, et al. Acta Crystallogr D Struct Biol. 2018 Jan 1;74(Pt 1):52-64. doi: 10.1107/S2059798318000050. Epub 2018 Jan 1. Acta Crystallogr D Struct Biol. 2018. PMID: 29372899 Free PMC article.
3,272 results