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When will RNA get its AlphaFold moment?
Schneider B, Sweeney BA, Bateman A, Cerny J, Zok T, Szachniuk M. Schneider B, et al. Among authors: szachniuk m. Nucleic Acids Res. 2023 Oct 13;51(18):9522-9532. doi: 10.1093/nar/gkad726. Nucleic Acids Res. 2023. PMID: 37702120 Free PMC article.
Entanglements of structure elements revealed in RNA 3D models.
Popenda M, Zok T, Sarzynska J, Korpeta A, Adamiak RW, Antczak M, Szachniuk M. Popenda M, et al. Among authors: szachniuk m. Nucleic Acids Res. 2021 Sep 27;49(17):9625-9632. doi: 10.1093/nar/gkab716. Nucleic Acids Res. 2021. PMID: 34432024 Free PMC article.
RNApdbee 2.0: multifunctional tool for RNA structure annotation.
Zok T, Antczak M, Zurkowski M, Popenda M, Blazewicz J, Adamiak RW, Szachniuk M. Zok T, et al. Among authors: szachniuk m. Nucleic Acids Res. 2018 Jul 2;46(W1):W30-W35. doi: 10.1093/nar/gky314. Nucleic Acids Res. 2018. PMID: 29718468 Free PMC article.
RNAspider: a webserver to analyze entanglements in RNA 3D structures.
Luwanski K, Hlushchenko V, Popenda M, Zok T, Sarzynska J, Martsich D, Szachniuk M, Antczak M. Luwanski K, et al. Among authors: szachniuk m. Nucleic Acids Res. 2022 Jul 5;50(W1):W663-W669. doi: 10.1093/nar/gkac218. Nucleic Acids Res. 2022. PMID: 35349710 Free PMC article.
LCS-TA to identify similar fragments in RNA 3D structures.
Wiedemann J, Zok T, Milostan M, Szachniuk M. Wiedemann J, et al. Among authors: szachniuk m. BMC Bioinformatics. 2017 Oct 23;18(1):456. doi: 10.1186/s12859-017-1867-6. BMC Bioinformatics. 2017. PMID: 29058576 Free PMC article.
45 results