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MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms.
Jorge F, Brealey JC, Brindley PJ, Buysse M, Cantacessi C, Duron O, Fichorova R, Fitzpatrick CR, Hahn M, Hunter C, Hervé V, Knoll LJ, Kohl KD, Lalle M, Lukeš J, Martínez JM, Perkins SL, Poulin R, Rosario K, Schneider AC, Schriml LM, Thompson LR, Walls RL, Dheilly NM. Jorge F, et al. Among authors: thompson lr. ISME Commun. 2022 Feb 1;2(1):9. doi: 10.1038/s43705-022-00092-w. ISME Commun. 2022. PMID: 37938691 Free PMC article.
Parasite microbiome project: Grand challenges.
Dheilly NM, Martínez Martínez J, Rosario K, Brindley PJ, Fichorova RN, Kaye JZ, Kohl KD, Knoll LJ, Lukeš J, Perkins SL, Poulin R, Schriml L, Thompson LR. Dheilly NM, et al. Among authors: thompson lr. PLoS Pathog. 2019 Oct 10;15(10):e1008028. doi: 10.1371/journal.ppat.1008028. eCollection 2019 Oct. PLoS Pathog. 2019. PMID: 31600339 Free PMC article. No abstract available.
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia JM, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TBK, Richardson L, Roux S, Schriml LM, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA. Vangay P, et al. Among authors: thompson lr. mSystems. 2021 Feb 23;6(1):e01194-20. doi: 10.1128/mSystems.01194-20. mSystems. 2021. PMID: 33622857 Free PMC article.
Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".
Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia JM, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TBK, Richardson L, Roux S, Schriml LM, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA. Vangay P, et al. Among authors: thompson lr. mSystems. 2021 May 4;6(3):e00273-21. doi: 10.1128/mSystems.00273-21. mSystems. 2021. PMID: 33947809 Free PMC article. No abstract available.
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.
Amato KR, G Sanders J, Song SJ, Nute M, Metcalf JL, Thompson LR, Morton JT, Amir A, J McKenzie V, Humphrey G, Gogul G, Gaffney J, L Baden A, A O Britton G, P Cuozzo F, Di Fiore A, J Dominy N, L Goldberg T, Gomez A, Kowalewski MM, J Lewis R, Link A, L Sauther M, Tecot S, A White B, E Nelson K, M Stumpf R, Knight R, R Leigh S. Amato KR, et al. Among authors: thompson lr. ISME J. 2019 Mar;13(3):576-587. doi: 10.1038/s41396-018-0175-0. Epub 2018 Jul 11. ISME J. 2019. PMID: 29995839 Free PMC article.
American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R. McDonald D, et al. Among authors: thompson lr. mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29795809 Free PMC article.
Physiology and evolution of nitrate acquisition in Prochlorococcus.
Berube PM, Biller SJ, Kent AG, Berta-Thompson JW, Roggensack SE, Roache-Johnson KH, Ackerman M, Moore LR, Meisel JD, Sher D, Thompson LR, Campbell L, Martiny AC, Chisholm SW. Berube PM, et al. Among authors: thompson lr. ISME J. 2015 May;9(5):1195-207. doi: 10.1038/ismej.2014.211. Epub 2014 Oct 28. ISME J. 2015. PMID: 25350156 Free PMC article.
124 results