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Cell type evolution reconstruction across species through cell phylogenies of single-cell RNA sequencing data.
Nat Ecol Evol. 2024 Feb;8(2):325-338. doi: 10.1038/s41559-023-02281-9. Epub 2024 Jan 5.
Nat Ecol Evol. 2024.
PMID: 38182680
Sponge Behavior and the Chemical Basis of Responses: A Post-Genomic View.
Leys SP, Mah JL, McGill PR, Hamonic L, De Leo FC, Kahn AS.
Leys SP, et al. Among authors: mah jl.
Integr Comp Biol. 2019 Oct 1;59(4):751-764. doi: 10.1093/icb/icz122.
Integr Comp Biol. 2019.
PMID: 31268144
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Integrating phylogenies into single-cell RNA sequencing analysis allows comparisons across species, genes, and cells.
Church SH, Mah JL, Dunn CW.
Church SH, et al. Among authors: mah jl.
PLoS Biol. 2024 May 24;22(5):e3002633. doi: 10.1371/journal.pbio.3002633. eCollection 2024 May.
PLoS Biol. 2024.
PMID: 38787797
Free PMC article.
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Normalizing need not be the norm: count-based math for analyzing single-cell data.
Church SH, Mah JL, Wagner G, Dunn CW.
Church SH, et al. Among authors: mah jl.
Theory Biosci. 2024 Feb;143(1):45-62. doi: 10.1007/s12064-023-00408-x. Epub 2023 Nov 10.
Theory Biosci. 2024.
PMID: 37947999
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The genome of the reef-building glass sponge Aphrocallistes vastus provides insights into silica biomineralization.
Francis WR, Eitel M, Vargas S, Garcia-Escudero CA, Conci N, Deister F, Mah JL, Guiglielmoni N, Krebs S, Blum H, Leys SP, Wörheide G.
Francis WR, et al. Among authors: mah jl.
R Soc Open Sci. 2023 Jun 21;10(6):230423. doi: 10.1098/rsos.230423. eCollection 2023 Jun.
R Soc Open Sci. 2023.
PMID: 37351491
Free PMC article.
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Think like a sponge: The genetic signal of sensory cells in sponges.
Mah JL, Leys SP.
Mah JL, et al.
Dev Biol. 2017 Nov 1;431(1):93-100. doi: 10.1016/j.ydbio.2017.06.012. Epub 2017 Jun 21.
Dev Biol. 2017.
PMID: 28647138
Free article.
Review.
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Choanoflagellate and choanocyte collar-flagellar systems and the assumption of homology.
Mah JL, Christensen-Dalsgaard KK, Leys SP.
Mah JL, et al.
Evol Dev. 2014 Jan-Feb;16(1):25-37. doi: 10.1111/ede.12060.
Evol Dev. 2014.
PMID: 24393465
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