Kmiecik S - Search Results

1

Structure prediction of linear and cyclic peptides using CABS-flex.

Badaczewska-Dawid A, Wróblewski K, Kurcinski M, Kmiecik S. Badaczewska-Dawid A, et al. Among authors: kmiecik s. Brief Bioinform. 2024 Jan 22;25(2):bbae003. doi: 10.1093/bib/bbae003. Brief Bioinform. 2024. PMID: 38305457 Free PMC article.

2

5-HT2 receptor affinity, docking studies and pharmacological evaluation of a series of 1,3-disubstituted thiourea derivatives.

Bielenica A, Kędzierska E, Koliński M, Kmiecik S, Koliński A, Fiorino F, Severino B, Magli E, Corvino A, Rossi I, Massarelli P, Kozioł AE, Sawczenko A, Struga M. Bielenica A, et al. Among authors: kmiecik s. Eur J Med Chem. 2016 Jun 30;116:173-186. doi: 10.1016/j.ejmech.2016.03.073. Epub 2016 Mar 30. Eur J Med Chem. 2016. PMID: 27061981

3

Denatured proteins and early folding intermediates simulated in a reduced conformational space.

Kmiecik S, Kurcinski M, Rutkowska A, Gront D, Kolinski A. Kmiecik S, et al. Acta Biochim Pol. 2006;53(1):131-44. Epub 2005 Dec 19. Acta Biochim Pol. 2006. PMID: 16365636

4

CABS-flex: Server for fast simulation of protein structure fluctuations.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Among authors: kmiecik s. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W427-31. doi: 10.1093/nar/gkt332. Epub 2013 May 8. Nucleic Acids Res. 2013. PMID: 23658222 Free PMC article.

5

CABS-flex predictions of protein flexibility compared with NMR ensembles.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Among authors: kmiecik s. Bioinformatics. 2014 Aug 1;30(15):2150-4. doi: 10.1093/bioinformatics/btu184. Epub 2014 Apr 15. Bioinformatics. 2014. PMID: 24735558 Free PMC article.

6

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site.

Kurcinski M, Jamroz M, Blaszczyk M, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: kmiecik s. Nucleic Acids Res. 2015 Jul 1;43(W1):W419-24. doi: 10.1093/nar/gkv456. Epub 2015 May 5. Nucleic Acids Res. 2015. PMID: 25943545 Free PMC article.

7

Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.

Blaszczyk M, Kurcinski M, Kouza M, Wieteska L, Debinski A, Kolinski A, Kmiecik S. Blaszczyk M, et al. Among authors: kmiecik s. Methods. 2016 Jan 15;93:72-83. doi: 10.1016/j.ymeth.2015.07.004. Epub 2015 Jul 10. Methods. 2016. PMID: 26165956 Free article.

8

Mechanism of Folding and Binding of an Intrinsically Disordered Protein As Revealed by ab Initio Simulations.

Kurcinski M, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: kmiecik s. J Chem Theory Comput. 2014 Jun 10;10(6):2224-31. doi: 10.1021/ct500287c. J Chem Theory Comput. 2014. PMID: 26580746

9

Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction.

Ciemny MP, Debinski A, Paczkowska M, Kolinski A, Kurcinski M, Kmiecik S. Ciemny MP, et al. Among authors: kmiecik s. Sci Rep. 2016 Dec 1;6:37532. doi: 10.1038/srep37532. Sci Rep. 2016. PMID: 27905468 Free PMC article.

10

Highly Flexible Protein-Peptide Docking Using CABS-Dock.

Ciemny MP, Kurcinski M, Kozak KJ, Kolinski A, Kmiecik S. Ciemny MP, et al. Among authors: kmiecik s. Methods Mol Biol. 2017;1561:69-94. doi: 10.1007/978-1-4939-6798-8_6. Methods Mol Biol. 2017. PMID: 28236234

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