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Biogeographic distribution of five Antarctic cyanobacteria using large-scale k-mer searching with sourmash branchwater.
Front Microbiol. 2024 Feb 19;15:1328083. doi: 10.3389/fmicb.2024.1328083. eCollection 2024.
Front Microbiol. 2024.
PMID: 38440141
Free PMC article.
Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash.
Rahman Hera M, Pierce-Ward NT, Koslicki D.
Rahman Hera M, et al. Among authors: pierce ward nt.
Genome Res. 2023 Jul;33(7):1061-1068. doi: 10.1101/gr.277651.123. Epub 2023 Jun 21.
Genome Res. 2023.
PMID: 37344105
Free PMC article.
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Ten simple rules and a template for creating workflows-as-applications.
Roach MJ, Pierce-Ward NT, Suchecki R, Mallawaarachchi V, Papudeshi B, Handley SA, Brown CT, Watson-Haigh NS, Edwards RA.
Roach MJ, et al. Among authors: pierce ward nt.
PLoS Comput Biol. 2022 Dec 15;18(12):e1010705. doi: 10.1371/journal.pcbi.1010705. eCollection 2022 Dec.
PLoS Comput Biol. 2022.
PMID: 36520686
Free PMC article.
No abstract available.
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Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
Portik DM, Brown CT, Pierce-Ward NT.
Portik DM, et al. Among authors: pierce ward nt.
BMC Bioinformatics. 2022 Dec 13;23(1):541. doi: 10.1186/s12859-022-05103-0.
BMC Bioinformatics. 2022.
PMID: 36513983
Free PMC article.
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Could a Focus on the "Why" of Taxonomy Help Taxonomy Better Respond to the Needs of Science and Society?
Pritchard L, Brown CT, Harrington B, Heath LS, Pierce-Ward NT, Vinatzer BA.
Pritchard L, et al. Among authors: pierce ward nt.
Front Microbiol. 2022 May 19;13:887310. doi: 10.3389/fmicb.2022.887310. eCollection 2022.
Front Microbiol. 2022.
PMID: 35663905
Free PMC article.
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Recovery from hybrid breakdown reveals a complex genetic architecture of mitonuclear incompatibilities.
Pereira RJ, Lima TG, Pierce-Ward NT, Chao L, Burton RS.
Pereira RJ, et al. Among authors: pierce ward nt.
Mol Ecol. 2021 Dec;30(23):6403-6416. doi: 10.1111/mec.15985. Epub 2021 Jun 8.
Mol Ecol. 2021.
PMID: 34003535
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Streamlining data-intensive biology with workflow systems.
Reiter T, Brooks PT, Irber L, Joslin SEK, Reid CM, Scott C, Brown CT, Pierce-Ward NT.
Reiter T, et al. Among authors: pierce ward nt.
Gigascience. 2021 Jan 13;10(1):giaa140. doi: 10.1093/gigascience/giaa140.
Gigascience. 2021.
PMID: 33438730
Free PMC article.
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