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Tailored Mass Spectral Data Exploration Using the SpecXplore Interactive Dashboard.
Mildau K, Ehlers H, Oesterle I, Pristner M, Warth B, Doppler M, Bueschl C, Zanghellini J, van der Hooft JJJ. Mildau K, et al. Among authors: van der hooft jjj. Anal Chem. 2024 Apr 16;96(15):5798-5806. doi: 10.1021/acs.analchem.3c04444. Epub 2024 Apr 2. Anal Chem. 2024. PMID: 38564584 Free PMC article.
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
Terlouw BR, Blin K, Navarro-Muñoz JC, Avalon NE, Chevrette MG, Egbert S, Lee S, Meijer D, Recchia MJJ, Reitz ZL, van Santen JA, Selem-Mojica N, Tørring T, Zaroubi L, Alanjary M, Aleti G, Aguilar C, Al-Salihi SAA, Augustijn HE, Avelar-Rivas JA, Avitia-Domínguez LA, Barona-Gómez F, Bernaldo-Agüero J, Bielinski VA, Biermann F, Booth TJ, Carrion Bravo VJ, Castelo-Branco R, Chagas FO, Cruz-Morales P, Du C, Duncan KR, Gavriilidou A, Gayrard D, Gutiérrez-García K, Haslinger K, Helfrich EJN, van der Hooft JJJ, Jati AP, Kalkreuter E, Kalyvas N, Kang KB, Kautsar S, Kim W, Kunjapur AM, Li YX, Lin GM, Loureiro C, Louwen JJR, Louwen NLL, Lund G, Parra J, Philmus B, Pourmohsenin B, Pronk LJU, Rego A, Rex DAB, Robinson S, Rosas-Becerra LR, Roxborough ET, Schorn MA, Scobie DJ, Singh KS, Sokolova N, Tang X, Udwary D, Vigneshwari A, Vind K, Vromans SPJM, Waschulin V, Williams SE, Winter JM, Witte TE, Xie H, Yang D, Yu J, Zdouc M, Zhong Z, Collemare J, Linington RG, Weber T, Medema MH. Terlouw BR, et al. Among authors: van santen ja, van der hooft jjj. Nucleic Acids Res. 2023 Jan 6;51(D1):D603-D610. doi: 10.1093/nar/gkac1049. Nucleic Acids Res. 2023. PMID: 36399496 Free PMC article.
Data mining and visualisation: general discussion.
Afonso C, Barrow MP, Davies AN, Delsuc MA, Ebbels T, Fernandez-Lima F, Gauchotte-Lindsay C, Giusti P, Goodacre R, Hertkorn N, Jansen JJ, Jones D, Kew W, Kuhn S, Le Guennec A, Lubben A, Parkinson J, Paša-Tolić L, Rogers S, Rudd TR, Schoenmakers PJ, Sidebottom P, Summerfield S, Tinnevelt GH, Trifirò G, Trygg J, van der Hooft JJJ. Afonso C, et al. Among authors: van der hooft jjj. Faraday Discuss. 2019 Aug 15;218(0):354-371. doi: 10.1039/C9FD90044F. Faraday Discuss. 2019. PMID: 31373341 No abstract available.
Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden.
Caraballo-Rodríguez AM, Puckett SP, Kyle KE, Petras D, da Silva R, Nothias LF, Ernst M, van der Hooft JJJ, Tripathi A, Wang M, Balunas MJ, Klassen JL, Dorrestein PC. Caraballo-Rodríguez AM, et al. Among authors: van der hooft jjj. mSystems. 2021 Aug 31;6(4):e0060121. doi: 10.1128/mSystems.00601-21. Epub 2021 Aug 3. mSystems. 2021. PMID: 34342533 Free PMC article.
Rapid Development of Improved Data-Dependent Acquisition Strategies.
Davies V, Wandy J, Weidt S, van der Hooft JJJ, Miller A, Daly R, Rogers S. Davies V, et al. Among authors: van der hooft jjj. Anal Chem. 2021 Apr 13;93(14):5676-5683. doi: 10.1021/acs.analchem.0c03895. Epub 2021 Mar 30. Anal Chem. 2021. PMID: 33784814 Free PMC article.
Homologue series detection and management in LC-MS data with homologueDiscoverer.
Mildau K, van der Hooft JJJ, Flasch M, Warth B, El Abiead Y, Koellensperger G, Zanghellini J, Büschl C. Mildau K, et al. Among authors: van der hooft jjj. Bioinformatics. 2022 Nov 15;38(22):5139-5140. doi: 10.1093/bioinformatics/btac647. Bioinformatics. 2022. PMID: 36165687 Free PMC article.
97 results