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Spectroscopic approaches for studies of site-specific DNA base and backbone 'breathing' using exciton-coupled dimer-labeled DNA.
ArXiv [Preprint]. 2024 Mar 27:arXiv:2403.16251v2.
ArXiv. 2024.
PMID: 38584614
Free PMC article.
Preprint.
Accurate Modeling of Excitonic Coupling in Cyanine Dye Cy3.
Sorour MI, Kistler KA, Marcus AH, Matsika S.
Sorour MI, et al.
J Phys Chem A. 2021 Sep 16;125(36):7852-7866. doi: 10.1021/acs.jpca.1c05556. Epub 2021 Sep 8.
J Phys Chem A. 2021.
PMID: 34494437
Free PMC article.
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Modeling the Electronic Absorption Spectra of the Indocarbocyanine Cy3.
Sorour MI, Marcus AH, Matsika S.
Sorour MI, et al.
Molecules. 2022 Jun 24;27(13):4062. doi: 10.3390/molecules27134062.
Molecules. 2022.
PMID: 35807308
Free PMC article.
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Unravelling the Origin of the Vibronic Spectral Signatures in an Excitonically Coupled Indocarbocyanine Cy3 Dimer.
Sorour MI, Marcus AH, Matsika S.
Sorour MI, et al.
J Phys Chem A. 2023 Nov 16;127(45):9530-9540. doi: 10.1021/acs.jpca.3c06090. Epub 2023 Nov 7.
J Phys Chem A. 2023.
PMID: 37934679
Free PMC article.
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Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites.
Heussman D, Enkhbaatar L, Sorour MI, Kistler KA, von Hippel PH, Matsika S, Marcus AH.
Heussman D, et al. Among authors: sorour mi.
Nucleic Acids Res. 2024 Feb 9;52(3):1272-1289. doi: 10.1093/nar/gkad1163.
Nucleic Acids Res. 2024.
PMID: 38050987
Free PMC article.
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Molecular Dynamical and Quantum Mechanical Exploration of the Site-Specific Dynamics of Cy3 Dimers Internally Linked to dsDNA.
Sorour MI, Kistler KA, Marcus AH, Matsika S.
Sorour MI, et al.
J Phys Chem B. 2024 Aug 15;128(32):7750-7760. doi: 10.1021/acs.jpcb.4c03115. Epub 2024 Aug 6.
J Phys Chem B. 2024.
PMID: 39105720
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