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Annotation of biologically relevant ligands in UniProtKB using ChEBI.
Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, Sigrist CJA, Redaschi N, Bridge A; UniProt Consortium. Coudert E, et al. Bioinformatics. 2023 Jan 1;39(1):btac793. doi: 10.1093/bioinformatics/btac793. Bioinformatics. 2023. PMID: 36484697 Free PMC article.
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD. Mitchell AL, et al. Among authors: madeira f. Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360. doi: 10.1093/nar/gky1100. Nucleic Acids Res. 2019. PMID: 30398656 Free PMC article.
The EMBL-EBI search and sequence analysis tools APIs in 2019.
Madeira F, Park YM, Lee J, Buso N, Gur T, Madhusoodanan N, Basutkar P, Tivey ARN, Potter SC, Finn RD, Lopez R. Madeira F, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W636-W641. doi: 10.1093/nar/gkz268. Nucleic Acids Res. 2019. PMID: 30976793 Free PMC article.
The European Nucleotide Archive in 2021.
Cummins C, Ahamed A, Aslam R, Burgin J, Devraj R, Edbali O, Gupta D, Harrison PW, Haseeb M, Holt S, Ibrahim T, Ivanov E, Jayathilaka S, Kadhirvelu V, Kay S, Kumar M, Lathi A, Leinonen R, Madeira F, Madhusoodanan N, Mansurova M, O'Cathail C, Pearce M, Pesant S, Rahman N, Rajan J, Rinck G, Selvakumar S, Sokolov A, Suman S, Thorne R, Totoo P, Vijayaraja S, Waheed Z, Zyoud A, Lopez R, Burdett T, Cochrane G. Cummins C, et al. Among authors: madeira f. Nucleic Acids Res. 2022 Jan 7;50(D1):D106-D110. doi: 10.1093/nar/gkab1051. Nucleic Acids Res. 2022. PMID: 34850158 Free PMC article.
Search and sequence analysis tools services from EMBL-EBI in 2022.
Madeira F, Pearce M, Tivey ARN, Basutkar P, Lee J, Edbali O, Madhusoodanan N, Kolesnikov A, Lopez R. Madeira F, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W276-W279. doi: 10.1093/nar/gkac240. Nucleic Acids Res. 2022. PMID: 35412617 Free PMC article.
The Dundee Resource for Sequence Analysis and Structure Prediction.
MacGowan SA, Madeira F, Britto-Borges T, Warowny M, Drozdetskiy A, Procter JB, Barton GJ. MacGowan SA, et al. Among authors: madeira f. Protein Sci. 2020 Jan;29(1):277-297. doi: 10.1002/pro.3783. Epub 2019 Nov 28. Protein Sci. 2020. PMID: 31710725 Free PMC article.
131 results