Shannon P - Search Results

1

Creation and maintenance of Helix, a Web based database of medical genetics laboratories, to serve the needs of the genetics community.

Tarczy-Hornoch P, Covington ML, Edwards J, Shannon P, Fuller S, Pagon RA. Tarczy-Hornoch P, et al. Among authors: shannon p. Proc AMIA Symp. 1998:341-5. Proc AMIA Symp. 1998. PMID: 9929238 Free PMC article.

2

GeneClinics: a hybrid text/data electronic publishing model using XML applied to clinical genetic testing.

Tarczy-Hornoch P, Shannon P, Baskin P, Espeseth M, Pagon RA. Tarczy-Hornoch P, et al. Among authors: shannon p. J Am Med Inform Assoc. 2000 May-Jun;7(3):267-76. doi: 10.1136/jamia.2000.0070267. J Am Med Inform Assoc. 2000. PMID: 10833163 Free PMC article.

3

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS. Shannon PT, et al. BMC Bioinformatics. 2006 Mar 28;7:176. doi: 10.1186/1471-2105-7-176. BMC Bioinformatics. 2006. PMID: 16569235 Free PMC article.

4

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: shannon p. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.

5

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Shannon P, et al. Genome Res. 2003 Nov;13(11):2498-504. doi: 10.1101/gr.1239303. Genome Res. 2003. PMID: 14597658 Free PMC article.

6

Derivation of genetic interaction networks from quantitative phenotype data.

Drees BL, Thorsson V, Carter GW, Rives AW, Raymond MZ, Avila-Campillo I, Shannon P, Galitski T. Drees BL, et al. Among authors: shannon p. Genome Biol. 2005;6(4):R38. doi: 10.1186/gb-2005-6-4-r38. Epub 2005 Mar 31. Genome Biol. 2005. PMID: 15833125 Free PMC article.

7

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.

Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L. Baliga NS, et al. Among authors: shannon p. Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14913-8. doi: 10.1073/pnas.192558999. Epub 2002 Oct 28. Proc Natl Acad Sci U S A. 2002. PMID: 12403819 Free PMC article.

8

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L. Bonneau R, et al. Among authors: shannon p. Genome Biol. 2004;5(8):R52. doi: 10.1186/gb-2004-5-8-r52. Epub 2004 Jul 12. Genome Biol. 2004. PMID: 15287974 Free PMC article.

9

System-based proteomic analysis of the interferon response in human liver cells.

Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG. Yan W, et al. Among authors: shannon p. Genome Biol. 2004;5(8):R54. doi: 10.1186/gb-2004-5-8-r54. Epub 2004 Jul 22. Genome Biol. 2004. PMID: 15287976 Free PMC article.

10

Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea.

Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. Baliga NS, et al. Among authors: shannon p. Genome Res. 2004 Nov;14(11):2221-34. doi: 10.1101/gr.2700304. Genome Res. 2004. PMID: 15520287 Free PMC article.

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