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Page 1
Adaptive Stochastic Optimization to Improve Protein Conformation Sampling.
IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):2759-2771. doi: 10.1109/TCBB.2021.3134103. Epub 2023 Oct 9.
IEEE/ACM Trans Comput Biol Bioinform. 2023.
PMID: 34882562
Building maps of protein structure spaces in template-free protein structure prediction.
Zaman AB, Shehu A.
Zaman AB, et al.
J Bioinform Comput Biol. 2019 Dec;17(6):1940013. doi: 10.1142/S0219720019400134.
J Bioinform Comput Biol. 2019.
PMID: 32019408
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Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering.
Zaman AB, Kamranfar P, Domeniconi C, Shehu A.
Zaman AB, et al.
Molecules. 2020 May 9;25(9):2228. doi: 10.3390/molecules25092228.
Molecules. 2020.
PMID: 32397410
Free PMC article.
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Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction.
Zaman AB, Shehu A.
Zaman AB, et al.
BMC Bioinformatics. 2019 Apr 25;20(1):211. doi: 10.1186/s12859-019-2794-5.
BMC Bioinformatics. 2019.
PMID: 31023237
Free PMC article.
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