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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1987 1
1996 1
1997 1
1999 1
2001 2
2002 6
2004 2
2005 1
2006 4
2007 3
2008 7
2009 5
2010 5
2011 5
2012 10
2013 6
2014 9
2015 13
2016 6
2017 12
2018 8
2019 17
2020 12
2021 20
2022 7
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150 results
Results by year
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Page 1
Single-cell analyses of aging, inflammation and senescence.
Uyar B, Palmer D, Kowald A, Murua Escobar H, Barrantes I, Möller S, Akalin A, Fuellen G. Uyar B, et al. Among authors: akalin a. Ageing Res Rev. 2020 Dec;64:101156. doi: 10.1016/j.arr.2020.101156. Epub 2020 Sep 16. Ageing Res Rev. 2020. PMID: 32949770 Free PMC article. Review.
Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng W, Kukalev A, Harabula I, Zea-Redondo L, Szabó D, Meijer M, Serebreni L, Zhang Y, Bianco S, Chiariello AM, Irastorza-Azcarate I, Thieme CJ, Sparks TM, Carvalho S, Fiorillo L, Musella F, Irani E, Torlai Triglia E, Kolodziejczyk AA, Abentung A, Apostolova G, Paul EJ, Franke V, Kempfer R, Akalin A, Teichmann SA, Dechant G, Ungless MA, Nicodemi M, Welch L, Castelo-Branco G, Pombo A. Winick-Ng W, et al. Among authors: akalin a. Nature. 2021 Nov;599(7886):684-691. doi: 10.1038/s41586-021-04081-2. Epub 2021 Nov 17. Nature. 2021. PMID: 34789882 Free PMC article.
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy.
Wyler E, Mösbauer K, Franke V, Diag A, Gottula LT, Arsiè R, Klironomos F, Koppstein D, Hönzke K, Ayoub S, Buccitelli C, Hoffmann K, Richter A, Legnini I, Ivanov A, Mari T, Del Giudice S, Papies J, Praktiknjo S, Meyer TF, Müller MA, Niemeyer D, Hocke A, Selbach M, Akalin A, Rajewsky N, Drosten C, Landthaler M. Wyler E, et al. Among authors: akalin a. iScience. 2021 Mar 19;24(3):102151. doi: 10.1016/j.isci.2021.102151. Epub 2021 Feb 6. iScience. 2021. PMID: 33585804 Free PMC article.
Deep learning for genomics using Janggu.
Kopp W, Monti R, Tamburrini A, Ohler U, Akalin A. Kopp W, et al. Among authors: akalin a. Nat Commun. 2020 Jul 13;11(1):3488. doi: 10.1038/s41467-020-17155-y. Nat Commun. 2020. PMID: 32661261 Free PMC article.
The SEQC2 epigenomics quality control (EpiQC) study.
Foox J, Nordlund J, Lalancette C, Gong T, Lacey M, Lent S, Langhorst BW, Ponnaluri VKC, Williams L, Padmanabhan KR, Cavalcante R, Lundmark A, Butler D, Mozsary C, Gurvitch J, Greally JM, Suzuki M, Menor M, Nasu M, Alonso A, Sheridan C, Scherer A, Bruinsma S, Golda G, Muszynska A, Łabaj PP, Campbell MA, Wos F, Raine A, Liljedahl U, Axelsson T, Wang C, Chen Z, Yang Z, Li J, Yang X, Wang H, Melnick A, Guo S, Blume A, Franke V, Ibanez de Caceres I, Rodriguez-Antolin C, Rosas R, Davis JW, Ishii J, Megherbi DB, Xiao W, Liao W, Xu J, Hong H, Ning B, Tong W, Akalin A, Wang Y, Deng Y, Mason CE. Foox J, et al. Among authors: akalin a. Genome Biol. 2021 Dec 6;22(1):332. doi: 10.1186/s13059-021-02529-2. Genome Biol. 2021. PMID: 34872606 Free PMC article.
Strategies for analyzing bisulfite sequencing data.
Wreczycka K, Gosdschan A, Yusuf D, Grüning B, Assenov Y, Akalin A. Wreczycka K, et al. Among authors: akalin a. J Biotechnol. 2017 Nov 10;261:105-115. doi: 10.1016/j.jbiotec.2017.08.007. Epub 2017 Aug 16. J Biotechnol. 2017. PMID: 28822795 Free article. Review.
PiGx: reproducible genomics analysis pipelines with GNU Guix.
Wurmus R, Uyar B, Osberg B, Franke V, Gosdschan A, Wreczycka K, Ronen J, Akalin A. Wurmus R, et al. Among authors: akalin a. Gigascience. 2018 Dec 1;7(12):giy123. doi: 10.1093/gigascience/giy123. Gigascience. 2018. PMID: 30277498 Free PMC article.
Deciphering human ribonucleoprotein regulatory networks.
Mukherjee N, Wessels HH, Lebedeva S, Sajek M, Ghanbari M, Garzia A, Munteanu A, Yusuf D, Farazi T, Hoell JI, Akat KM, Akalin A, Tuschl T, Ohler U. Mukherjee N, et al. Among authors: akalin a. Nucleic Acids Res. 2019 Jan 25;47(2):570-581. doi: 10.1093/nar/gky1185. Nucleic Acids Res. 2019. PMID: 30517751 Free PMC article.
150 results