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Mapping genomic and epigenomic evolution in cancer ecosystems.

Ushijima T, Clark SJ, Tan P. Ushijima T, et al. Among authors: clark sj. Science. 2021 Sep 24;373(6562):1474-1479. doi: 10.1126/science.abh1645. Epub 2021 Sep 23. Science. 2021. PMID: 34554797 Review.

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Multi-omics profiling of mouse gastrulation at single-cell resolution.

Argelaguet R, Clark SJ, Mohammed H, Stapel LC, Krueger C, Kapourani CA, Imaz-Rosshandler I, Lohoff T, Xiang Y, Hanna CW, Smallwood S, Ibarra-Soria X, Buettner F, Sanguinetti G, Xie W, Krueger F, Göttgens B, Rugg-Gunn PJ, Kelsey G, Dean W, Nichols J, Stegle O, Marioni JC, Reik W. Argelaguet R, et al. Among authors: clark sj. Nature. 2019 Dec;576(7787):487-491. doi: 10.1038/s41586-019-1825-8. Epub 2019 Dec 11. Nature. 2019. PMID: 31827285 Free PMC article.

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The complement system in age-related macular degeneration.

Armento A, Ueffing M, Clark SJ. Armento A, et al. Among authors: clark sj. Cell Mol Life Sci. 2021 May;78(10):4487-4505. doi: 10.1007/s00018-021-03796-9. Epub 2021 Mar 9. Cell Mol Life Sci. 2021. PMID: 33751148 Free PMC article. Review.

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Methyl-CpG-binding domain proteins: readers of the epigenome.

Du Q, Luu PL, Stirzaker C, Clark SJ. Du Q, et al. Among authors: clark sj. Epigenomics. 2015;7(6):1051-73. doi: 10.2217/epi.15.39. Epub 2015 Apr 30. Epigenomics. 2015. PMID: 25927341 Free article. Review.

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Should the SARS-CoV-2 vaccine be mandatory for nurses? An ethical debate.

Osbourne RM, Clark SJ. Osbourne RM, et al. Among authors: clark sj. Br J Nurs. 2021 Jan 28;30(2):116-121. doi: 10.12968/bjon.2021.30.2.116. Br J Nurs. 2021. PMID: 33529104 Free article.

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Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.

Angermueller C, Clark SJ, Lee HJ, Macaulay IC, Teng MJ, Hu TX, Krueger F, Smallwood S, Ponting CP, Voet T, Kelsey G, Stegle O, Reik W. Angermueller C, et al. Among authors: clark sj. Nat Methods. 2016 Mar;13(3):229-232. doi: 10.1038/nmeth.3728. Epub 2016 Jan 11. Nat Methods. 2016. PMID: 26752769 Free PMC article.

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scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.

Clark SJ, Argelaguet R, Kapourani CA, Stubbs TM, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W. Clark SJ, et al. Nat Commun. 2018 Feb 22;9(1):781. doi: 10.1038/s41467-018-03149-4. Nat Commun. 2018. PMID: 29472610 Free PMC article.

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Tumor Cell IDO Enhances Immune Suppression and Decreases Survival Independent of Tryptophan Metabolism in Glioblastoma.

Zhai L, Bell A, Ladomersky E, Lauing KL, Bollu L, Nguyen B, Genet M, Kim M, Chen P, Mi X, Wu JD, Schipma MJ, Wray B, Griffiths J, Unwin RD, Clark SJ, Acharya R, Bao R, Horbinski C, Lukas RV, Schiltz GE, Wainwright DA. Zhai L, et al. Among authors: clark sj. Clin Cancer Res. 2021 Dec 1;27(23):6514-6528. doi: 10.1158/1078-0432.CCR-21-1392. Epub 2021 Sep 3. Clin Cancer Res. 2021. PMID: 34479957 Free PMC article.

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Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.

Pidsley R, Zotenko E, Peters TJ, Lawrence MG, Risbridger GP, Molloy P, Van Djik S, Muhlhausler B, Stirzaker C, Clark SJ. Pidsley R, et al. Among authors: clark sj. Genome Biol. 2016 Oct 7;17(1):208. doi: 10.1186/s13059-016-1066-1. Genome Biol. 2016. PMID: 27717381 Free PMC article.

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Benign anal disease.

Clark SJ. Clark SJ. JAAPA. 2016 Nov;29(11):23-29. doi: 10.1097/01.JAA.0000502857.05728.98. JAAPA. 2016. PMID: 27749400 Review.

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