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Did you mean r safadi (42 results)?
SAFARI: shape analysis for AI-segmented images.
Fernández E, Yang S, Chiou SH, Moon C, Zhang C, Yao B, Xiao G, Li Q. Fernández E, et al. BMC Med Imaging. 2022 Jul 22;22(1):129. doi: 10.1186/s12880-022-00849-8. BMC Med Imaging. 2022. PMID: 35869424 Free PMC article.
A tool to translate the ROI to analyzable shape representations and features is greatly needed. RESULTS: We developed SAFARI (shape analysis for AI-segmented images), an open-source R package with a user-friendly online tool kit for ROI labelling and shape feature e …
A tool to translate the ROI to analyzable shape representations and features is greatly needed. RESULTS: We developed SAFARI (shape a …
R-Loop-Mediated ssDNA Breaks Accumulate Following Short-Term Exposure to the HDAC Inhibitor Romidepsin.
Safari M, Litman T, Robey RW, Aguilera A, Chakraborty AR, Reinhold WC, Basseville A, Petrukhin L, Scotto L, O'Connor OA, Pommier Y, Fojo AT, Bates SE. Safari M, et al. Mol Cancer Res. 2021 Aug;19(8):1361-1374. doi: 10.1158/1541-7786.MCR-20-0833. Epub 2021 May 28. Mol Cancer Res. 2021. PMID: 34050002 Free PMC article.
We show that inhibition of BER proteins such as PARP will increase dsDNA breaks in this context. These studies establish accumulation of R-loops as a consequence of romidepsin-mediated histone hyperacetylation. ...IMPLICATIONS: Key HDAC inhibitor mechanisms of action remai …
We show that inhibition of BER proteins such as PARP will increase dsDNA breaks in this context. These studies establish accumulation of …
Platform presentations.
Pereda J, Niimi G, Kaul JM, Mishra S, Pangtey B, Peri D, Cannella V, Peri G, Valentino A, Li Volsi F, Lo Verde R, Russo E, Sciuto A, Sunseri A, Modica G, Gravante G, Ong SL, Metcalfe M, Lloyd D, Dennison A, Macchi V, Porzionato A, Parenti A, De Caro R, Al-Harmni KI, Rahemo ZI, Al-Khan HI, Bakan V, Demirpolat G, Bozkurt M, Gumusalan Y, Acer N, Demir M, Taskoparan H, Akkaya A, Yildirim B, Camurdanoglu M, Guven G, Ozden H, Kabay S, Ustuner C, Burukoglu D, Ustuner D, Degirmenci I, Akyuz F, Tekin N, Kucuk F, Gurer F, Ustuner MC, Ozbag D, Ozkaya M, Ciralik H, Tolun FI, Yuzbasioglu F, Arslan S, Moshkdanian G, Pouya F, Nematollahi-Mahani A, Nematollahi-Mahani SN, Ger R, Nikfarjam J, Dooley K, Liu S, Li Z, Lin X, Meng H, Liu C, Feng L, Chung MS, Shin DS, Havet E, Dujardin AC, Duparc F, Freger P, Oommen A, Stosch C, Koebke J, Herzig S, Jqbal A, Gazzani P, Rattay T, Fruhstorfer B, Vohrah A, Wellings RM, Brydges S, Smith GR, Roebuck J, Abrahams PH, Baca V, Otcenasek M, Svatos F, Smrzova T, Grill R, Kachlik D, Skubal J, Dzupa V, Doubkova A, Klepacek I, Stingl J, Ali M, Bedir Y, Weber G, Malek K, Patrick A, Rochambeau B, Knickelbein P, Choi DY, Hur MS, Youn KH, Hu KS, Kim HJ, Aksoy F, Yildirim … See abstract for full author list ➔ Pereda J, et al. Surg Radiol Anat. 2009 Sep;31 Suppl 1:49-93. doi: 10.1007/BF03371485. Surg Radiol Anat. 2009. PMID: 27392491 No abstract available.
The interaction of phages and bacteria: the co-evolutionary arms race.
Safari F, Sharifi M, Farajnia S, Akbari B, Karimi Baba Ahmadi M, Negahdaripour M, Ghasemi Y. Safari F, et al. Crit Rev Biotechnol. 2020 Mar;40(2):119-137. doi: 10.1080/07388551.2019.1674774. Epub 2019 Dec 2. Crit Rev Biotechnol. 2020. PMID: 31793351 Review.
Bacteria use various strategies to overcome the invading phages, including adsorption inhibition, restriction-modification (R/E) systems, CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated proteins) systems, abortive infection (Abi), et …
Bacteria use various strategies to overcome the invading phages, including adsorption inhibition, restriction-modification (R/E) syst …
Measuring universal health coverage based on an index of effective coverage of health services in 204 countries and territories, 1990-2019: a systematic analysis for the Global Burden of Disease Study 2019.
GBD 2019 Universal Health Coverage Collaborators. GBD 2019 Universal Health Coverage Collaborators. Lancet. 2020 Oct 17;396(10258):1250-1284. doi: 10.1016/S0140-6736(20)30750-9. Epub 2020 Aug 27. Lancet. 2020. PMID: 32861314 Free PMC article.
In 2019, the UHC effective coverage index was associated with pooled health spending per capita (r=0.79), although countries across the development spectrum had much lower UHC effective coverage than is potentially achievable relative to their health spending. ...
In 2019, the UHC effective coverage index was associated with pooled health spending per capita (r=0.79), although countries across t …
FastRemap: a tool for quickly remapping reads between genome assemblies.
Kim JS, Firtina C, Cavlak MB, Senol Cali D, Alkan C, Mutlu O. Kim JS, et al. Bioinformatics. 2022 Sep 30;38(19):4633-4635. doi: 10.1093/bioinformatics/btac554. Bioinformatics. 2022. PMID: 35976109
Source code and user manual are freely available at: github.com/CMU-SAFARI/FastRemap. Docker image available at: https://hub.docker.com/r/alkanlab/fastremap. ...
Source code and user manual are freely available at: github.com/CMU-SAFARI/FastRemap. Docker image available at: https://hub.docker.c …
IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis.
Ashtiani M, Nickchi P, Jahangiri-Tazehkand S, Safari A, Mirzaie M, Jafari M. Ashtiani M, et al. BMC Bioinformatics. 2019 Feb 12;20(1):73. doi: 10.1186/s12859-019-2659-y. BMC Bioinformatics. 2019. PMID: 30755155 Free PMC article.
Using an evolution-based concept, i.e. interolog which refers to interacting orthologous protein sets, pave the way toward an optimal benchmark. RESULTS: Here, we provide an R package, IMMAN, as a tool for reconstructing Interolog Protein Network (IPN) by integrating sever …
Using an evolution-based concept, i.e. interolog which refers to interacting orthologous protein sets, pave the way toward an optimal benchm …
Investigating the Relationship between Big Five Personality Traits and Sports Performance among Disabled Athletes.
Zar A, Reza SH, Ahmadi F, Nikolaidis PT, Safari MA, Keshazarz MH, Ramsbottom R. Zar A, et al. Biomed Res Int. 2022 May 18;2022:8072824. doi: 10.1155/2022/8072824. eCollection 2022. Biomed Res Int. 2022. PMID: 35647180 Free PMC article.
There was a significant relationship between the flexibility factor for men and women (r = 0.123, p = 0.017), neuroticism (r = 0.114, p = 0.027), adaptation (r = 0.171, p = 0.001), extraversion (r = 0.157, p = 0.002), duty orientation (r = 0.104 …
There was a significant relationship between the flexibility factor for men and women (r = 0.123, p = 0.017), neuroticism (r = …
130 results