Shmakov SA[au] - Search Results

Year	Number of Results
2017	1
2018	2
2019	4
2020	5
2021	4
2023	0

1

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.

Makarova KS, Wolf YI, Iranzo J, Shmakov SA, Alkhnbashi OS, Brouns SJJ, Charpentier E, Cheng D, Haft DH, Horvath P, Moineau S, Mojica FJM, Scott D, Shah SA, Siksnys V, Terns MP, Venclovas Č, White MF, Yakunin AF, Yan W, Zhang F, Garrett RA, Backofen R, van der Oost J, Barrangou R, Koonin EV. Makarova KS, et al. Among authors: shmakov sa. Nat Rev Microbiol. 2020 Feb;18(2):67-83. doi: 10.1038/s41579-019-0299-x. Epub 2019 Dec 19. Nat Rev Microbiol. 2020. PMID: 31857715 Free PMC article. Review.

2

Toxin-antitoxin RNA pairs safeguard CRISPR-Cas systems.

Li M, Gong L, Cheng F, Yu H, Zhao D, Wang R, Wang T, Zhang S, Zhou J, Shmakov SA, Koonin EV, Xiang H. Li M, et al. Among authors: shmakov sa. Science. 2021 Apr 30;372(6541):eabe5601. doi: 10.1126/science.abe5601. Science. 2021. PMID: 33926924

3

CRISPR Arrays Away from cas Genes.

Shmakov SA, Utkina I, Wolf YI, Makarova KS, Severinov KV, Koonin EV. Shmakov SA, et al. CRISPR J. 2020 Dec;3(6):535-549. doi: 10.1089/crispr.2020.0062. CRISPR J. 2020. PMID: 33346707 Free PMC article.

4

CRISPRidentify: identification of CRISPR arrays using machine learning approach.

Mitrofanov A, Alkhnbashi OS, Shmakov SA, Makarova KS, Koonin EV, Backofen R. Mitrofanov A, et al. Among authors: shmakov sa. Nucleic Acids Res. 2021 Feb 26;49(4):e20. doi: 10.1093/nar/gkaa1158. Nucleic Acids Res. 2021. PMID: 33290505 Free PMC article.

5

Machine-learning approach expands the repertoire of anti-CRISPR protein families.

Gussow AB, Park AE, Borges AL, Shmakov SA, Makarova KS, Wolf YI, Bondy-Denomy J, Koonin EV. Gussow AB, et al. Among authors: shmakov sa. Nat Commun. 2020 Jul 29;11(1):3784. doi: 10.1038/s41467-020-17652-0. Nat Commun. 2020. PMID: 32728052 Free PMC article.

6

Mapping CRISPR spaceromes reveals vast host-specific viromes of prokaryotes.

Shmakov SA, Wolf YI, Savitskaya E, Severinov KV, Koonin EV. Shmakov SA, et al. Commun Biol. 2020 Jun 22;3(1):321. doi: 10.1038/s42003-020-1014-1. Commun Biol. 2020. PMID: 32572116 Free PMC article.

7

CRISPR-Cas in mobile genetic elements: counter-defence and beyond.

Faure G, Shmakov SA, Yan WX, Cheng DR, Scott DA, Peters JE, Makarova KS, Koonin EV. Faure G, et al. Among authors: shmakov sa. Nat Rev Microbiol. 2019 Aug;17(8):513-525. doi: 10.1038/s41579-019-0204-7. Nat Rev Microbiol. 2019. PMID: 31165781

8

Unprecedented Diversity of Unique CRISPR-Cas-Related Systems and Cas1 Homologs in Asgard Archaea.

Makarova KS, Wolf YI, Shmakov SA, Liu Y, Li M, Koonin EV. Makarova KS, et al. Among authors: shmakov sa. CRISPR J. 2020 Jun;3(3):156-163. doi: 10.1089/crispr.2020.0012. CRISPR J. 2020. PMID: 33555973 Free PMC article.

9

Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features.

Yutin N, Benler S, Shmakov SA, Wolf YI, Tolstoy I, Rayko M, Antipov D, Pevzner PA, Koonin EV. Yutin N, et al. Among authors: shmakov sa. Nat Commun. 2021 Feb 16;12(1):1044. doi: 10.1038/s41467-021-21350-w. Nat Commun. 2021. PMID: 33594055 Free PMC article.

10

Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia.

Moya-Beltrán A, Makarova KS, Acuña LG, Wolf YI, Covarrubias PC, Shmakov SA, Silva C, Tolstoy I, Johnson DB, Koonin EV, Quatrini R. Moya-Beltrán A, et al. Among authors: shmakov sa. CRISPR J. 2021 Oct;4(5):656-672. doi: 10.1089/crispr.2021.0051. Epub 2021 Sep 28. CRISPR J. 2021. PMID: 34582696 Free PMC article.

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