Search Page

1

Cite

Share

Population genomics of Klebsiella pneumoniae.

Wyres KL, Lam MMC, Holt KE. Wyres KL, et al. Nat Rev Microbiol. 2020 Jun;18(6):344-359. doi: 10.1038/s41579-019-0315-1. Epub 2020 Feb 13. Nat Rev Microbiol. 2020. PMID: 32055025 Review.

Cite

Share

2

Cite

Share

Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria.

Wyres KL, Holt KE. Wyres KL, et al. Curr Opin Microbiol. 2018 Oct;45:131-139. doi: 10.1016/j.mib.2018.04.004. Epub 2018 May 1. Curr Opin Microbiol. 2018. PMID: 29723841 Free article. Review.

Cite

Share

3

Cite

Share

The diversity of Klebsiella pneumoniae surface polysaccharides.

Follador R, Heinz E, Wyres KL, Ellington MJ, Kowarik M, Holt KE, Thomson NR. Follador R, et al. Among authors: wyres kl. Microb Genom. 2016 Aug 25;2(8):e000073. doi: 10.1099/mgen.0.000073. eCollection 2016 Aug. Microb Genom. 2016. PMID: 28348868 Free PMC article.

Cite

Share

4

Cite

Share

Trycycler: consensus long-read assemblies for bacterial genomes.

Wick RR, Judd LM, Cerdeira LT, Hawkey J, Méric G, Vezina B, Wyres KL, Holt KE. Wick RR, et al. Among authors: wyres kl. Genome Biol. 2021 Sep 14;22(1):266. doi: 10.1186/s13059-021-02483-z. Genome Biol. 2021. PMID: 34521459 Free PMC article.

Cite

Share

5

Cite

Share

Recovery of small plasmid sequences via Oxford Nanopore sequencing.

Wick RR, Judd LM, Wyres KL, Holt KE. Wick RR, et al. Among authors: wyres kl. Microb Genom. 2021 Aug;7(8):000631. doi: 10.1099/mgen.0.000631. Microb Genom. 2021. PMID: 34431763 Free PMC article.

Cite

Share

6

Cite

Share

Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones.

Wyres KL, Holt KE. Wyres KL, et al. Trends Microbiol. 2016 Dec;24(12):944-956. doi: 10.1016/j.tim.2016.09.007. Epub 2016 Oct 11. Trends Microbiol. 2016. PMID: 27742466 Review.

Cite

Share

7

Cite

Share

Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae.

Viehweger A, Blumenscheit C, Lippmann N, Wyres KL, Brandt C, Hans JB, Hölzer M, Irber L, Gatermann S, Lübbert C, Pletz MW, Holt KE, König B. Viehweger A, et al. Among authors: wyres kl. Microb Genom. 2021 Dec;7(12):000741. doi: 10.1099/mgen.0.000741. Microb Genom. 2021. PMID: 34913861 Free PMC article.

Cite

Share

8

Cite

Share

Evolution and genomic insight into methicillin-resistant Staphylococcus aureus ST9 in China.

Jiang N, Wyres KL, Li J, Feßler AT, Krüger H, Wang Y, Holt KE, Schwarz S, Wu C. Jiang N, et al. Among authors: wyres kl. J Antimicrob Chemother. 2021 Jun 18;76(7):1703-1711. doi: 10.1093/jac/dkab106. J Antimicrob Chemother. 2021. PMID: 33822977

Cite

Share

9

Cite

Share

Detection of plasmid contigs in draft genome assemblies using customized Kraken databases.

Gomi R, Wyres KL, Holt KE. Gomi R, et al. Among authors: wyres kl. Microb Genom. 2021 Apr;7(4):000550. doi: 10.1099/mgen.0.000550. Microb Genom. 2021. PMID: 33826492 Free PMC article.

Cite

Share

10

Cite

Share

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex.

Lam MMC, Wick RR, Watts SC, Cerdeira LT, Wyres KL, Holt KE. Lam MMC, et al. Among authors: wyres kl. Nat Commun. 2021 Jul 7;12(1):4188. doi: 10.1038/s41467-021-24448-3. Nat Commun. 2021. PMID: 34234121 Free PMC article.

Cite

Share