Zhang SV[au] - Search Results

Year	Number of Results
2014	1
2016	1
2018	1
2020	2
2021	2
2022	1
2023	0

1

A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity.

Pyke RM, Mellacheruvu D, Dea S, Abbott CW, McDaniel L, Bhave DP, Zhang SV, Levy E, Bartha G, West J, Snyder MP, Chen RO, Boyle SM. Pyke RM, et al. Among authors: zhang sv. Nat Commun. 2022 Apr 12;13(1):1925. doi: 10.1038/s41467-022-29203-w. Nat Commun. 2022. PMID: 35414054 Free PMC article.

2

Precision Neoantigen Discovery Using Large-scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation.

Pyke RM, Mellacheruvu D, Dea S, Abbott CW, Zhang SV, Phillips NA, Harris J, Bartha G, Desai S, McClory R, West J, Snyder MP, Chen R, Boyle SM. Pyke RM, et al. Among authors: zhang sv. Mol Cell Proteomics. 2021;20:100111. doi: 10.1016/j.mcpro.2021.100111. Epub 2021 Jun 12. Mol Cell Proteomics. 2021. PMID: 34126241 Free PMC article.

3

The sequencing and interpretation of the genome obtained from a Serbian individual.

Mohammed Ismail W, Pagel KA, Pejaver V, Zhang SV, Casasa S, Mort M, Cooper DN, Hahn MW, Radivojac P. Mohammed Ismail W, et al. Among authors: zhang sv. PLoS One. 2018 Dec 19;13(12):e0208901. doi: 10.1371/journal.pone.0208901. eCollection 2018. PLoS One. 2018. PMID: 30566479 Free PMC article.

4

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.

Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, Peery A, Phillippy AM, Sharakhova MV, Tannier E, Unger MF, Zhang SV, Alekseyev MA, Besansky NJ, Chauve C, Emrich SJ, Sharakhov IV. Waterhouse RM, et al. Among authors: zhang sv. BMC Biol. 2020 Jan 2;18(1):1. doi: 10.1186/s12915-019-0728-3. BMC Biol. 2020. PMID: 31898513 Free PMC article.

5

Prediction of Immunotherapy Response in Melanoma through Combined Modeling of Neoantigen Burden and Immune-Related Resistance Mechanisms.

Abbott CW, Boyle SM, Pyke RM, McDaniel LD, Levy E, Navarro FCP, Mellacheruvu D, Zhang SV, Tan M, Santiago R, Rusan ZM, Milani P, Bartha G, Harris J, McClory R, Snyder MP, Jang S, Chen R. Abbott CW, et al. Among authors: zhang sv. Clin Cancer Res. 2021 Aug 1;27(15):4265-4276. doi: 10.1158/1078-0432.CCR-20-4314. Clin Cancer Res. 2021. PMID: 34341053 Free PMC article.

6

AGOUTI: improving genome assembly and annotation using transcriptome data.

Zhang SV, Zhuo L, Hahn MW. Zhang SV, et al. Gigascience. 2016 Jul 19;5(1):31. doi: 10.1186/s13742-016-0136-3. Gigascience. 2016. PMID: 27435057 Free PMC article.

7

Intraspecific Genetic Variation Underlying Postmating Reproductive Barriers between Species in the Wild Tomato Clade (Solanum sect. Lycopersicon).

Jewell CP, Zhang SV, Gibson MJS, Tovar-Méndez A, McClure B, Moyle LC. Jewell CP, et al. Among authors: zhang sv. J Hered. 2020 Apr 2;111(2):216-226. doi: 10.1093/jhered/esaa003. J Hered. 2020. PMID: 32072169

8

Sequencing, assembling, and correcting draft genomes using recombinant populations.

Hahn MW, Zhang SV, Moyle LC. Hahn MW, et al. Among authors: zhang sv. G3 (Bethesda). 2014 Apr 16;4(4):669-79. doi: 10.1534/g3.114.010264. G3 (Bethesda). 2014. PMID: 24531727 Free PMC article.

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