Similar articles for PMID: 24057214

Year	Number of Results
2005	1
2007	2
2008	1
2009	1
2010	6
2011	6
2012	8
2013	10
2014	12
2015	11
2016	13
2017	12
2018	12
2019	5
2020	2
2021	3
2023	1
2024	0

1

A general approach for discriminative de novo motif discovery from high-throughput data.

Grau J, Posch S, Grosse I, Keilwagen J. Grau J, et al. Nucleic Acids Res. 2013 Nov;41(21):e197. doi: 10.1093/nar/gkt831. Epub 2013 Sep 20. Nucleic Acids Res. 2013. PMID: 24057214 Free PMC article.

2

Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data.

Eggeling R, Roos T, Myllymäki P, Grosse I. Eggeling R, et al. BMC Bioinformatics. 2015 Nov 9;16:375. doi: 10.1186/s12859-015-0797-4. BMC Bioinformatics. 2015. PMID: 26552868 Free PMC article.

3

Motif-based analysis of large nucleotide data sets using MEME-ChIP.

Ma W, Noble WS, Bailey TL. Ma W, et al. Nat Protoc. 2014;9(6):1428-50. doi: 10.1038/nprot.2014.083. Epub 2014 May 22. Nat Protoc. 2014. PMID: 24853928 Free PMC article.

4

An Efficient Algorithm for Discovering Motifs in Large DNA Data Sets.

Yu Q, Huo H, Chen X, Guo H, Vitter JS, Huan J. Yu Q, et al. IEEE Trans Nanobioscience. 2015 Jul;14(5):535-44. doi: 10.1109/TNB.2015.2421340. Epub 2015 Apr 9. IEEE Trans Nanobioscience. 2015. PMID: 25872217

5

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

Saad C, Noé L, Richard H, Leclerc J, Buisine MP, Touzet H, Figeac M. Saad C, et al. BMC Bioinformatics. 2018 Jun 11;19(1):223. doi: 10.1186/s12859-018-2215-1. BMC Bioinformatics. 2018. PMID: 29890948 Free PMC article.

6

Discriminative motif analysis of high-throughput dataset.

Yao Z, Macquarrie KL, Fong AP, Tapscott SJ, Ruzzo WL, Gentleman RC. Yao Z, et al. Bioinformatics. 2014 Mar 15;30(6):775-83. doi: 10.1093/bioinformatics/btt615. Epub 2013 Oct 25. Bioinformatics. 2014. PMID: 24162561 Free PMC article.

7

SIOMICS: a novel approach for systematic identification of motifs in ChIP-seq data.

Ding J, Hu H, Li X. Ding J, et al. Nucleic Acids Res. 2014 Mar;42(5):e35. doi: 10.1093/nar/gkt1288. Epub 2013 Dec 9. Nucleic Acids Res. 2014. PMID: 24322294 Free PMC article.

8

TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.

Dang LT, Tondl M, Chiu MHH, Revote J, Paten B, Tano V, Tokolyi A, Besse F, Quaife-Ryan G, Cumming H, Drvodelic MJ, Eichenlaub MP, Hallab JC, Stolper JS, Rossello FJ, Bogoyevitch MA, Jans DA, Nim HT, Porrello ER, Hudson JE, Ramialison M. Dang LT, et al. BMC Genomics. 2018 Apr 5;19(1):238. doi: 10.1186/s12864-018-4630-0. BMC Genomics. 2018. PMID: 29621972 Free PMC article.

9

BEESEM: estimation of binding energy models using HT-SELEX data.

Ruan S, Swamidass SJ, Stormo GD. Ruan S, et al. Bioinformatics. 2017 Aug 1;33(15):2288-2295. doi: 10.1093/bioinformatics/btx191. Bioinformatics. 2017. PMID: 28379348 Free PMC article.

10

A Fast Cluster Motif Finding Algorithm for ChIP-Seq Data Sets.

Zhang Y, Wang P. Zhang Y, et al. Biomed Res Int. 2015;2015:218068. doi: 10.1155/2015/218068. Epub 2015 Jul 5. Biomed Res Int. 2015. PMID: 26236718 Free PMC article.

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