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Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics.
Tsitsiklis A, Osborne CM, Kamm J, Williamson K, Kalantar K, Dudas G, Caldera S, Lyden A, Tan M, Neff N, Soesanto V, Harris JK, Ambroggio L, Maddux AB, Carpenter TC, Reeder RW, Locandro C, Simões EAF, Leroue MK, Hall MW, Zuppa AF, Carcillo J, Meert KL, Sapru A, Pollack MM, McQuillen PS, Notterman DA, Dean JM, Zinter MS, Wagner BD, DeRisi JL, Mourani PM, Langelier CR. Tsitsiklis A, et al. Among authors: soesanto v. Lancet Microbe. 2022 Apr;3(4):e284-e293. doi: 10.1016/S2666-5247(21)00304-9. Epub 2022 Mar 9. Lancet Microbe. 2022. PMID: 35544065 Free PMC article.
Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children.
Mick E, Tsitsiklis A, Spottiswoode N, Caldera S, Serpa PH, Detweiler AM, Neff N, Pisco AO, Li LM, Retallack H, Ratnasiri K, Williamson KM, Soesanto V, Simões EAF, Smith C, Abuogi L, Kistler A, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. Among authors: soesanto v. Nat Commun. 2022 Jul 8;13(1):3937. doi: 10.1038/s41467-022-31600-0. Nat Commun. 2022. PMID: 35803954 Free PMC article.
Viral Detection by Reverse Transcriptase Polymerase Chain Reaction in Upper Respiratory Tract and Metagenomic RNA Sequencing in Lower Respiratory Tract in Critically Ill Children With Suspected Lower Respiratory Tract Infection.
Osborne CM, Langelier C, Kamm J, Williamson K, Ambroggio L, Reeder RW, Locandro C, Kirk Harris J, Wagner BD, Maddux AB, Caldera S, Lyden A, Soesanto V, Simões EAF, Leroue MK, Carpenter TC, Hall MW, Zuppa AF, Carcillo JA, Meert KL, Pollack MM, McQuillen PS, Notterman DA, DeRisi J, Mourani PM; National Institute for Child Health and Human Development Collaborative Pediatric Critical Care Research Network. Osborne CM, et al. Among authors: soesanto v. Pediatr Crit Care Med. 2024 Jan 1;25(1):e1-e11. doi: 10.1097/PCC.0000000000003336. Epub 2023 Sep 21. Pediatr Crit Care Med. 2024. PMID: 37732845 Free PMC article.
Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children.
Mick E, Tsitsiklis A, Kamm J, Kalantar KL, Caldera S, Lyden A, Tan M, Detweiler AM, Neff N, Osborne CM, Williamson KM, Soesanto V, Leroue M, Maddux AB, Simões EA, Carpenter TC, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. Among authors: soesanto v. J Clin Invest. 2023 Apr 3;133(7):e165904. doi: 10.1172/JCI165904. J Clin Invest. 2023. PMID: 37009900 Free PMC article.
Elevated inflammatory fecal immune factors in men who have sex with men with HIV associate with microbiome composition and gut barrier function.
Littlefield KM, Schneider JM, Neff CP, Soesanto V, Siebert JC, Nusbacher NM, Moreno-Huizar N, Cartwright IM, Armstrong AJS, Colgen SP, Lozupone CA, Palmer BE. Littlefield KM, et al. Among authors: soesanto v. Front Immunol. 2022 Dec 20;13:1072720. doi: 10.3389/fimmu.2022.1072720. eCollection 2022. Front Immunol. 2022. PMID: 36605218 Free PMC article.
Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults.
Mick E, Tsitsiklis A, Spottiswoode N, Caldera S, Serpa PH, Detweiler AM, Neff N, Pisco AO, Li LM, Retallack H, Ratnasiri K, Williamson KM, Soesanto V, Simões EAF, Kistler A, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. Among authors: soesanto v. Res Sq [Preprint]. 2021 Aug 26:rs.3.rs-784784. doi: 10.21203/rs.3.rs-784784/v1. Res Sq. 2021. PMID: 34462739 Free PMC article. Updated. Preprint.