"Sequence Analysis, Protein/methods"[MeSH] - Search Results

Year	Number of Results
1986	4
1987	11
1988	13
1989	18
1990	15
1991	28
1992	23
1993	18
1994	22
1995	22
1996	17
1997	54
1998	39
1999	67
2000	115
2001	136
2002	248
2003	423
2004	566
2005	642
2006	572
2007	609
2008	528
2009	392
2010	360
2011	288
2012	311
2013	238
2014	260
2015	318
2016	209
2017	231
2018	207
2019	157
2020	130
2021	117
2022	42
2023	38
2024	33

1

Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences.

Rives A, Meier J, Sercu T, Goyal S, Lin Z, Liu J, Guo D, Ott M, Zitnick CL, Ma J, Fergus R. Rives A, et al. Proc Natl Acad Sci U S A. 2021 Apr 13;118(15):e2016239118. doi: 10.1073/pnas.2016239118. Proc Natl Acad Sci U S A. 2021. PMID: 33876751 Free PMC article.

2

Protein Sequence Analysis Using the MPI Bioinformatics Toolkit.

Gabler F, Nam SZ, Till S, Mirdita M, Steinegger M, Söding J, Lupas AN, Alva V. Gabler F, et al. Curr Protoc Bioinformatics. 2020 Dec;72(1):e108. doi: 10.1002/cpbi.108. Curr Protoc Bioinformatics. 2020. PMID: 33315308

3

Protein Sequence Analysis by Proximities.

Schleif FM. Schleif FM. Methods Mol Biol. 2016;1362:185-95. doi: 10.1007/978-1-4939-3106-4_12. Methods Mol Biol. 2016. PMID: 26519178

4

Sequence Similarity Searching.

Hu G, Kurgan L. Hu G, et al. Curr Protoc Protein Sci. 2019 Feb;95(1):e71. doi: 10.1002/cpps.71. Epub 2018 Aug 13. Curr Protoc Protein Sci. 2019. PMID: 30102464 Review.

5

CD-HIT: accelerated for clustering the next-generation sequencing data.

Fu L, Niu B, Zhu Z, Wu S, Li W. Fu L, et al. Bioinformatics. 2012 Dec 1;28(23):3150-2. doi: 10.1093/bioinformatics/bts565. Epub 2012 Oct 11. Bioinformatics. 2012. PMID: 23060610 Free PMC article.

6

Benchmarking Methods of Protein Structure Alignment.

Sykes J, Holland BR, Charleston MA. Sykes J, et al. J Mol Evol. 2020 Sep;88(7):575-597. doi: 10.1007/s00239-020-09960-2. Epub 2020 Jul 28. J Mol Evol. 2020. PMID: 32725409

7

Multiple sequence alignment.

Pirovano W, Heringa J. Pirovano W, et al. Methods Mol Biol. 2008;452:143-61. doi: 10.1007/978-1-60327-159-2_7. Methods Mol Biol. 2008. PMID: 18566763 Review.

8

Principal components analysis of protein sequence clusters.

Wang B, Kennedy MA. Wang B, et al. J Struct Funct Genomics. 2014 Mar;15(1):1-11. doi: 10.1007/s10969-014-9173-2. Epub 2014 Feb 5. J Struct Funct Genomics. 2014. PMID: 24496727 Free PMC article.

9

Large-Scale Sequence Comparison.

Lal D, Verma M. Lal D, et al. Methods Mol Biol. 2017;1525:191-224. doi: 10.1007/978-1-4939-6622-6_9. Methods Mol Biol. 2017. PMID: 27896723

10

Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features.

Ding Z, Kihara D. Ding Z, et al. Curr Protoc Protein Sci. 2018 Aug;93(1):e62. doi: 10.1002/cpps.62. Epub 2018 Jun 21. Curr Protoc Protein Sci. 2018. PMID: 29927082 Free PMC article.

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