"danko cg"[au] "Chou SP"[au] - Search Results

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Genetic dissection of the RNA polymerase II transcription cycle.

Chou SP, Alexander AK, Rice EJ, Choate LA, Danko CG. Chou SP, et al. Among authors: danko cg. Elife. 2022 Jul 1;11:e78458. doi: 10.7554/eLife.78458. Elife. 2022. PMID: 35775732 Free PMC article.

Prediction of histone post-translational modification patterns based on nascent transcription data.

Wang Z, Chivu AG, Choate LA, Rice EJ, Miller DC, Chu T, Chou SP, Kingsley NB, Petersen JL, Finno CJ, Bellone RR, Antczak DF, Lis JT, Danko CG. Wang Z, et al. Among authors: chou sp, danko cg. Nat Genet. 2022 Mar;54(3):295-305. doi: 10.1038/s41588-022-01026-x. Epub 2022 Mar 10. Nat Genet. 2022. PMID: 35273399 Free PMC article.

Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis.

Wang MFZ, Mantri M, Chou SP, Scuderi GJ, McKellar DW, Butcher JT, Danko CG, De Vlaminck I. Wang MFZ, et al. Among authors: chou sp, danko cg. Nat Commun. 2021 Apr 12;12(1):2158. doi: 10.1038/s41467-021-22496-3. Nat Commun. 2021. PMID: 33846360 Free PMC article.

Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis.

Mukai C, Choi E, Sams KL, Klampen EZ, Anguish L, Marks BA, Rice EJ, Wang Z, Choate LA, Chou SP, Kato Y, Miller AD, Danko CG, Coonrod SA. Mukai C, et al. Among authors: chou sp, danko cg. BMC Vet Res. 2020 Jun 22;16(1):206. doi: 10.1186/s12917-020-02395-3. BMC Vet Res. 2020. PMID: 32571313 Free PMC article.

AlleleHMM: a data-driven method to identify allele specific differences in distributed functional genomic marks.

Chou SP, Danko CG. Chou SP, et al. Among authors: danko cg. Nucleic Acids Res. 2019 Jun 20;47(11):e64. doi: 10.1093/nar/gkz176. Nucleic Acids Res. 2019. PMID: 30918970 Free PMC article.

Discovering Transcriptional Regulatory Elements From Run-On and Sequencing Data Using the Web-Based dREG Gateway.

Chu T, Wang Z, Chou SP, Danko CG. Chu T, et al. Among authors: chou sp, danko cg. Curr Protoc Bioinformatics. 2019 Jun;66(1):e70. doi: 10.1002/cpbi.70. Epub 2018 Dec 27. Curr Protoc Bioinformatics. 2019. PMID: 30589513 Free PMC article.

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