(Weihong Qi[Author]) AND ((Switzerland[Affiliation]) OR (USA[Affiliation])) - Search Results

Year	Number of Results
2005	2
2006	3
2007	3
2008	1
2009	5
2010	3
2012	3
2013	5
2014	2
2015	4
2016	4
2017	5
2018	4
2019	7
2020	2
2021	9
2022	10
2023	7
2024	1

1

Hazard potential of Swiss Ixodes ricinus ticks: Virome composition and presence of selected bacterial and protozoan pathogens.

Stegmüller S, Qi W, Torgerson PR, Fraefel C, Kubacki J. Stegmüller S, et al. Among authors: qi w. PLoS One. 2023 Nov 13;18(11):e0290942. doi: 10.1371/journal.pone.0290942. eCollection 2023. PLoS One. 2023. PMID: 37956168 Free PMC article.

2

Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes.

Sannino C, Qi W, Rüthi J, Stierli B, Frey B. Sannino C, et al. Among authors: qi w. Environ Microbiome. 2023 Jun 16;18(1):54. doi: 10.1186/s40793-023-00509-6. Environ Microbiome. 2023. PMID: 37328770 Free PMC article.

3

AlcoR: alignment-free simulation, mapping, and visualization of low-complexity regions in biological data.

Silva JM, Qi W, Pinho AJ, Pratas D. Silva JM, et al. Among authors: qi w. Gigascience. 2022 Dec 28;12:giad101. doi: 10.1093/gigascience/giad101. Gigascience. 2022. PMID: 38091509 Free PMC article.

4

Viral Metagenomic Analysis of Aedes albopictus Mosquitos from Southern Switzerland.

Kubacki J, Flacio E, Qi W, Guidi V, Tonolla M, Fraefel C. Kubacki J, et al. Among authors: qi w. Viruses. 2020 Aug 24;12(9):929. doi: 10.3390/v12090929. Viruses. 2020. PMID: 32846980 Free PMC article.

5

Differential Viral Genome Diversity of Healthy and RSS-Affected Broiler Flocks.

Kubacki J, Qi W, Fraefel C. Kubacki J, et al. Among authors: qi w. Microorganisms. 2022 May 25;10(6):1092. doi: 10.3390/microorganisms10061092. Microorganisms. 2022. PMID: 35744610 Free PMC article.

6

Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease.

Bao K, Li X, Poveda L, Qi W, Selevsek N, Gumus P, Emingil G, Grossmann J, Diaz PI, Hajishengallis G, Bostanci N, Belibasakis GN. Bao K, et al. Among authors: qi w. Front Cell Infect Microbiol. 2020 Oct 2;10:588155. doi: 10.3389/fcimb.2020.588155. eCollection 2020. Front Cell Infect Microbiol. 2020. PMID: 33117738 Free PMC article.

7

Haplotype-resolved DNA methylome of African cassava genome.

Zhong Z, Feng S, Mansfeld BN, Ke Y, Qi W, Lim YW, Gruissem W, Bart RS, Jacobsen SE. Zhong Z, et al. Among authors: qi w. Plant Biotechnol J. 2023 Feb;21(2):247-249. doi: 10.1111/pbi.13955. Epub 2022 Dec 8. Plant Biotechnol J. 2023. PMID: 36318278 Free PMC article. No abstract available.

8

Virus Diversity, Abundance, and Evolution in Three Different Bat Colonies in Switzerland.

Wiederkehr MA, Qi W, Schoenbaechler K, Fraefel C, Kubacki J. Wiederkehr MA, et al. Among authors: qi w. Viruses. 2022 Aug 29;14(9):1911. doi: 10.3390/v14091911. Viruses. 2022. PMID: 36146717 Free PMC article.

9

Viral Mimicry Response Is Associated With Clinical Outcome in Pleural Mesothelioma.

Sun S, Qi W, Rehrauer H, Ronner M, Hariharan A, Wipplinger M, Meiller C, Stahel R, Früh M, Cerciello F, Fonteneau JF, Jean D, Felley-Bosco E. Sun S, et al. Among authors: qi w. JTO Clin Res Rep. 2022 Nov 7;3(12):100430. doi: 10.1016/j.jtocrr.2022.100430. eCollection 2022 Dec. JTO Clin Res Rep. 2022. PMID: 36467966 Free PMC article.

10

Heterogeneous RNA editing and influence of ADAR2 on mesothelioma chemoresistance and the tumor microenvironment.

Hariharan A, Qi W, Rehrauer H, Wu L, Ronner M, Wipplinger M, Kresoja-Rakic J, Sun S, Oton-Gonzalez L, Sculco M, Serre-Beinier V, Meiller C, Blanquart C, Fonteneau JF, Vrugt B, Rüschoff JH, Opitz I, Jean D, de Perrot M, Felley-Bosco E. Hariharan A, et al. Among authors: qi w. Mol Oncol. 2022 Dec;16(22):3949-3974. doi: 10.1002/1878-0261.13322. Epub 2022 Oct 31. Mol Oncol. 2022. PMID: 36221913 Free PMC article.

11

Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars.

Kuon JE, Qi W, Schläpfer P, Hirsch-Hoffmann M, von Bieberstein PR, Patrignani A, Poveda L, Grob S, Keller M, Shimizu-Inatsugi R, Grossniklaus U, Vanderschuren H, Gruissem W. Kuon JE, et al. Among authors: qi w. BMC Biol. 2019 Sep 18;17(1):75. doi: 10.1186/s12915-019-0697-6. BMC Biol. 2019. PMID: 31533702 Free PMC article.

12

In vivo adenine base editing of PCSK9 in macaques reduces LDL cholesterol levels.

Rothgangl T, Dennis MK, Lin PJC, Oka R, Witzigmann D, Villiger L, Qi W, Hruzova M, Kissling L, Lenggenhager D, Borrelli C, Egli S, Frey N, Bakker N, Walker JA 2nd, Kadina AP, Victorov DV, Pacesa M, Kreutzer S, Kontarakis Z, Moor A, Jinek M, Weissman D, Stoffel M, van Boxtel R, Holden K, Pardi N, Thöny B, Häberle J, Tam YK, Semple SC, Schwank G. Rothgangl T, et al. Among authors: qi w. Nat Biotechnol. 2021 Aug;39(8):949-957. doi: 10.1038/s41587-021-00933-4. Epub 2021 May 19. Nat Biotechnol. 2021. PMID: 34012094 Free PMC article.

13

Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses.

Lim YW, Mansfeld BN, Schläpfer P, Gilbert KB, Narayanan NN, Qi W, Wang Q, Zhong Z, Boyher A, Gehan J, Beyene G, Lin ZD, Esuma W, Feng S, Chanez C, Eggenberger N, Adiga G, Alicai T, Jacobsen SE, Taylor NJ, Gruissem W, Bart RS. Lim YW, et al. Among authors: qi w. Nat Commun. 2022 Jul 7;13(1):3933. doi: 10.1038/s41467-022-31414-0. Nat Commun. 2022. PMID: 35798722 Free PMC article.

14

The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features.

Qi W, Lim YW, Patrignani A, Schläpfer P, Bratus-Neuenschwander A, Grüter S, Chanez C, Rodde N, Prat E, Vautrin S, Fustier MA, Pratas D, Schlapbach R, Gruissem W. Qi W, et al. Gigascience. 2022 Mar 24;11:giac028. doi: 10.1093/gigascience/giac028. Gigascience. 2022. PMID: 35333302 Free PMC article.

15

Shotgun Metagenomics of Deep Forest Soil Layers Show Evidence of Altered Microbial Genetic Potential for Biogeochemical Cycling.

Frey B, Varliero G, Qi W, Stierli B, Walthert L, Brunner I. Frey B, et al. Among authors: qi w. Front Microbiol. 2022 Mar 1;13:828977. doi: 10.3389/fmicb.2022.828977. eCollection 2022. Front Microbiol. 2022. PMID: 35300488 Free PMC article.

16

Microbial and host immune factors as drivers of COPD.

Mika M, Nita I, Morf L, Qi W, Beyeler S, Bernasconi E, Marsland BJ, Ott SR, von Garnier C, Hilty M. Mika M, et al. Among authors: qi w. ERJ Open Res. 2018 Jul 3;4(3):00015-2018. doi: 10.1183/23120541.00015-2018. eCollection 2018 Jul. ERJ Open Res. 2018. PMID: 29992131 Free PMC article.

17

Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity.

Qi W, Cascarano MC, Schlapbach R, Katharios P, Vaughan L, Seth-Smith HMB. Qi W, et al. Genome Biol Evol. 2018 Jun 1;10(6):1363-1374. doi: 10.1093/gbe/evy092. Genome Biol Evol. 2018. PMID: 29726925 Free PMC article.

18

Endogenous retrovirus expression activates type-I interferon signaling in an experimental mouse model of mesothelioma development.

Sun S, Frontini F, Qi W, Hariharan A, Ronner M, Wipplinger M, Blanquart C, Rehrauer H, Fonteneau JF, Felley-Bosco E. Sun S, et al. Among authors: qi w. Cancer Lett. 2021 Jun 1;507:26-38. doi: 10.1016/j.canlet.2021.03.004. Epub 2021 Mar 10. Cancer Lett. 2021. PMID: 33713739 Free article.

19

Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors.

Frachon L, Arrigo L, Rusman Q, Poveda L, Qi W, Scopece G, Schiestl FP. Frachon L, et al. Among authors: qi w. Mol Biol Evol. 2023 Mar 4;40(3):msad036. doi: 10.1093/molbev/msad036. Mol Biol Evol. 2023. PMID: 36795638 Free PMC article.

20

Comparative metagenomics of Daphnia symbionts.

Qi W, Nong G, Preston JF, Ben-Ami F, Ebert D. Qi W, et al. BMC Genomics. 2009 Apr 21;10:172. doi: 10.1186/1471-2164-10-172. BMC Genomics. 2009. PMID: 19383155 Free PMC article.

21

Microbial dynamics in soils of the Damma glacier forefield show succession in the functional genetic potential.

Feng M, Varliero G, Qi W, Stierli B, Edwards A, Robinson S, van der Heijden MGA, Frey B. Feng M, et al. Among authors: qi w. Environ Microbiol. 2023 Dec;25(12):3116-3138. doi: 10.1111/1462-2920.16497. Epub 2023 Sep 9. Environ Microbiol. 2023. PMID: 37688461

22

The RNA-binding protein Musashi controls axon compartment-specific synaptic connectivity through ptp69D mRNA poly(A)-tailing.

Landínez-Macías M, Qi W, Bratus-Neuenschwander A, Müller M, Urwyler O. Landínez-Macías M, et al. Among authors: qi w. Cell Rep. 2021 Sep 14;36(11):109713. doi: 10.1016/j.celrep.2021.109713. Cell Rep. 2021. PMID: 34525368 Free article.

23

Nasopharyngeal microbiota in infants with acute otitis media.

Hilty M, Qi W, Brugger SD, Frei L, Agyeman P, Frey PM, Aebi S, Mühlemann K. Hilty M, et al. Among authors: qi w. J Infect Dis. 2012 Apr 1;205(7):1048-55. doi: 10.1093/infdis/jis024. Epub 2012 Feb 20. J Infect Dis. 2012. PMID: 22351941 Free PMC article.

24

The Pattern of RNA Editing Changes in Pleural Mesothelioma upon Epithelial-Mesenchymal Transition.

Felley-Bosco E, Qi W, Jean D, Meiller C, Rehrauer H. Felley-Bosco E, et al. Among authors: qi w. Int J Mol Sci. 2023 Feb 2;24(3):2874. doi: 10.3390/ijms24032874. Int J Mol Sci. 2023. PMID: 36769192 Free PMC article.

25

Microbial communities in the respiratory tract of patients with interstitial lung disease.

Garzoni C, Brugger SD, Qi W, Wasmer S, Cusini A, Dumont P, Gorgievski-Hrisoho M, Mühlemann K, von Garnier C, Hilty M. Garzoni C, et al. Among authors: qi w. Thorax. 2013 Dec;68(12):1150-6. doi: 10.1136/thoraxjnl-2012-202917. Epub 2013 Aug 14. Thorax. 2013. PMID: 23945167 Free PMC article.

26

Resistance development in Escherichia coli to delafloxacin at pHs 6.0 and 7.3 compared to ciprofloxacin.

Bösch A, Macha ME, Ren Q, Kohler P, Qi W, Babouee Flury B. Bösch A, et al. Among authors: qi w. Antimicrob Agents Chemother. 2023 Nov 15;67(11):e0162522. doi: 10.1128/aac.01625-22. Epub 2023 Oct 26. Antimicrob Agents Chemother. 2023. PMID: 37882542 Free PMC article.

27

Metagenomic analysis of fecal and tissue samples from 18 endemic bat species in Switzerland revealed a diverse virus composition including potentially zoonotic viruses.

Hardmeier I, Aeberhard N, Qi W, Schoenbaechler K, Kraettli H, Hatt JM, Fraefel C, Kubacki J. Hardmeier I, et al. Among authors: qi w. PLoS One. 2021 Jun 16;16(6):e0252534. doi: 10.1371/journal.pone.0252534. eCollection 2021. PLoS One. 2021. PMID: 34133435 Free PMC article.

28

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano.

Wudarski J, Simanov D, Ustyantsev K, de Mulder K, Grelling M, Grudniewska M, Beltman F, Glazenburg L, Demircan T, Wunderer J, Qi W, Vizoso DB, Weissert PM, Olivieri D, Mouton S, Guryev V, Aboobaker A, Schärer L, Ladurner P, Berezikov E. Wudarski J, et al. Among authors: qi w. Nat Commun. 2017 Dec 14;8(1):2120. doi: 10.1038/s41467-017-02214-8. Nat Commun. 2017. PMID: 29242515 Free PMC article.

29

Long-term mercury contamination does not affect the microbial gene potential for C and N cycling in soils but enhances detoxification gene abundance.

Frey B, Rast BM, Qi W, Stierli B, Brunner I. Frey B, et al. Among authors: qi w. Front Microbiol. 2022 Oct 5;13:1034138. doi: 10.3389/fmicb.2022.1034138. eCollection 2022. Front Microbiol. 2022. PMID: 36274742 Free PMC article.

30

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.

Junier T, Huber M, Schmutz S, Kufner V, Zagordi O, Neuenschwander S, Ramette A, Kubacki J, Bachofen C, Qi W, Laubscher F, Cordey S, Kaiser L, Beuret C, Barbié V, Fellay J, Lebrand A. Junier T, et al. Among authors: qi w. Genes (Basel). 2019 Aug 28;10(9):655. doi: 10.3390/genes10090655. Genes (Basel). 2019. PMID: 31466373 Free PMC article.

31

In vivo cytidine base editing of hepatocytes without detectable off-target mutations in RNA and DNA.

Villiger L, Rothgangl T, Witzigmann D, Oka R, Lin PJC, Qi W, Janjuha S, Berk C, Ringnalda F, Beattie MB, Stoffel M, Thöny B, Hall J, Rehrauer H, van Boxtel R, Tam YK, Schwank G. Villiger L, et al. Among authors: qi w. Nat Biomed Eng. 2021 Feb;5(2):179-189. doi: 10.1038/s41551-020-00671-z. Epub 2021 Jan 25. Nat Biomed Eng. 2021. PMID: 33495639 Free PMC article.

32

Dynamics of the nasal microbiota in infancy: a prospective cohort study.

Mika M, Mack I, Korten I, Qi W, Aebi S, Frey U, Latzin P, Hilty M. Mika M, et al. Among authors: qi w. J Allergy Clin Immunol. 2015 Apr;135(4):905-912.e11. doi: 10.1016/j.jaci.2014.12.1909. Epub 2015 Jan 27. J Allergy Clin Immunol. 2015. PMID: 25636948 Free article.

33

Cecropia peltata accumulates starch or soluble glycogen by differentially regulating starch biosynthetic genes.

Bischof S, Umhang M, Eicke S, Streb S, Qi W, Zeeman SC. Bischof S, et al. Among authors: qi w. Plant Cell. 2013 Apr;25(4):1400-15. doi: 10.1105/tpc.113.109793. Epub 2013 Apr 30. Plant Cell. 2013. PMID: 23632447 Free PMC article.

34

Age-Dependent Dissimilarity of the Nasopharyngeal and Middle Ear Microbiota in Children With Acute Otitis Media.

Brugger SD, Kraemer JG, Qi W, Bomar L, Oppliger A, Hilty M. Brugger SD, et al. Among authors: qi w. Front Genet. 2019 Jun 19;10:555. doi: 10.3389/fgene.2019.00555. eCollection 2019. Front Genet. 2019. PMID: 31275355 Free PMC article.

35

Serodiagnosis of Echinococcus spp. infection: explorative selection of diagnostic antigens by peptide microarray.

List C, Qi W, Maag E, Gottstein B, Müller N, Felger I. List C, et al. Among authors: qi w. PLoS Negl Trop Dis. 2010 Aug 3;4(8):e771. doi: 10.1371/journal.pntd.0000771. PLoS Negl Trop Dis. 2010. PMID: 20689813 Free PMC article.

36

Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids.

Sedeek KE, Qi W, Schauer MA, Gupta AK, Poveda L, Xu S, Liu ZJ, Grossniklaus U, Schiestl FP, Schlüter PM. Sedeek KE, et al. Among authors: qi w. PLoS One. 2013 May 29;8(5):e64621. doi: 10.1371/journal.pone.0064621. Print 2013. PLoS One. 2013. PMID: 23734209 Free PMC article.

37

Complete Genome Sequence of a Rhabdovirus Strain from Culex Mosquitos Collected in Southern Switzerland.

Kubacki J, Hardmeier I, Qi W, Flacio E, Tonolla M, Fraefel C. Kubacki J, et al. Among authors: qi w. Microbiol Resour Announc. 2021 Jan 7;10(1):e01234-20. doi: 10.1128/MRA.01234-20. Microbiol Resour Announc. 2021. PMID: 33414339 Free PMC article.

38

Shotgun metagenomics reveals distinct functional diversity and metabolic capabilities between 12 000-year-old permafrost and active layers on Muot da Barba Peider (Swiss Alps).

Perez-Mon C, Qi W, Vikram S, Frossard A, Makhalanyane T, Cowan D, Frey B. Perez-Mon C, et al. Among authors: qi w. Microb Genom. 2021 Apr;7(4):000558. doi: 10.1099/mgen.0.000558. Microb Genom. 2021. PMID: 33848236 Free PMC article.

39

Searching for new plastic-degrading enzymes from the plastisphere of alpine soils using a metagenomic mining approach.

Frey B, Aiesi M, Rast BM, Rüthi J, Julmi J, Stierli B, Qi W, Brunner I. Frey B, et al. Among authors: qi w. PLoS One. 2024 Apr 5;19(4):e0300503. doi: 10.1371/journal.pone.0300503. eCollection 2024. PLoS One. 2024. PMID: 38578779 Free PMC article.

40

High temperatures enhance the microbial genetic potential to recycle C and N from necromass in high-mountain soils.

Donhauser J, Qi W, Bergk-Pinto B, Frey B. Donhauser J, et al. Among authors: qi w. Glob Chang Biol. 2021 Apr;27(7):1365-1386. doi: 10.1111/gcb.15492. Epub 2021 Feb 3. Glob Chang Biol. 2021. PMID: 33336444

41

Antibiotic-resistant indicator bacteria in irrigation water: High prevalence of extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli.

Gekenidis MT, Qi W, Hummerjohann J, Zbinden R, Walsh F, Drissner D. Gekenidis MT, et al. Among authors: qi w. PLoS One. 2018 Nov 26;13(11):e0207857. doi: 10.1371/journal.pone.0207857. eCollection 2018. PLoS One. 2018. PMID: 30475879 Free PMC article.

42

Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a case-control study.

Mika M, Maurer J, Korten I, Allemann A, Aebi S, Brugger SD, Qi W, Frey U, Latzin P, Hilty M. Mika M, et al. Among authors: qi w. Microbiome. 2017 Jul 24;5(1):85. doi: 10.1186/s40168-017-0302-6. Microbiome. 2017. PMID: 28738889 Free PMC article.

43

SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis.

Hatakeyama M, Opitz L, Russo G, Qi W, Schlapbach R, Rehrauer H. Hatakeyama M, et al. Among authors: qi w. BMC Bioinformatics. 2016 Jun 2;17(1):228. doi: 10.1186/s12859-016-1104-8. BMC Bioinformatics. 2016. PMID: 27255077 Free PMC article.

44

Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing.

Qi W, Käser M, Röltgen K, Yeboah-Manu D, Pluschke G. Qi W, et al. PLoS Pathog. 2009 Sep;5(9):e1000580. doi: 10.1371/journal.ppat.1000580. Epub 2009 Sep 11. PLoS Pathog. 2009. PMID: 19806175 Free PMC article.

45

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex.

Abu-Ali GS, Lacher DW, Wick LM, Qi W, Whittam TS. Abu-Ali GS, et al. Among authors: qi w. BMC Genomics. 2009 Jul 3;10:296. doi: 10.1186/1471-2164-10-296. BMC Genomics. 2009. PMID: 19575794 Free PMC article.

46

Apomictic and sexual germline development differ with respect to cell cycle, transcriptional, hormonal and epigenetic regulation.

Schmidt A, Schmid MW, Klostermeier UC, Qi W, Guthörl D, Sailer C, Waller M, Rosenstiel P, Grossniklaus U. Schmidt A, et al. Among authors: qi w. PLoS Genet. 2014 Jul 10;10(7):e1004476. doi: 10.1371/journal.pgen.1004476. eCollection 2014 Jul. PLoS Genet. 2014. PMID: 25010342 Free PMC article.

47

Whole transcriptome analysis of the poultry red mite Dermanyssus gallinae (De Geer, 1778).

Schicht S, Qi W, Poveda L, Strube C. Schicht S, et al. Among authors: qi w. Parasitology. 2014 Mar;141(3):336-46. doi: 10.1017/S0031182013001467. Epub 2013 Oct 18. Parasitology. 2014. PMID: 24135293 Free article.

48

Seahorse Brood Pouch Transcriptome Reveals Common Genes Associated with Vertebrate Pregnancy.

Whittington CM, Griffith OW, Qi W, Thompson MB, Wilson AB. Whittington CM, et al. Among authors: qi w. Mol Biol Evol. 2015 Dec;32(12):3114-31. doi: 10.1093/molbev/msv177. Epub 2015 Sep 1. Mol Biol Evol. 2015. PMID: 26330546 Free article.

49

Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

Zhang W, Qi W, Albert TJ, Motiwala AS, Alland D, Hyytia-Trees EK, Ribot EM, Fields PI, Whittam TS, Swaminathan B. Zhang W, et al. Among authors: qi w. Genome Res. 2006 Jun;16(6):757-67. doi: 10.1101/gr.4759706. Epub 2006 Apr 10. Genome Res. 2006. PMID: 16606700 Free PMC article.

50

The nasal microbiota in infants with cystic fibrosis in the first year of life: a prospective cohort study.

Mika M, Korten I, Qi W, Regamey N, Frey U, Casaulta C, Latzin P, Hilty M; SCILD study group. Mika M, et al. Among authors: qi w. Lancet Respir Med. 2016 Aug;4(8):627-635. doi: 10.1016/S2213-2600(16)30081-9. Epub 2016 May 11. Lancet Respir Med. 2016. PMID: 27180018

51

Generation of renal Epo-producing cell lines by conditional gene tagging reveals rapid HIF-2 driven Epo kinetics, cell autonomous feedback regulation, and a telocyte phenotype.

Imeri F, Nolan KA, Bapst AM, Santambrogio S, Abreu-Rodríguez I, Spielmann P, Pfundstein S, Libertini S, Crowther L, Orlando IMC, Dahl SL, Keodara A, Kuo W, Kurtcuoglu V, Scholz CC, Qi W, Hummler E, Hoogewijs D, Wenger RH. Imeri F, et al. Among authors: qi w. Kidney Int. 2019 Feb;95(2):375-387. doi: 10.1016/j.kint.2018.08.043. Epub 2018 Nov 27. Kidney Int. 2019. PMID: 30502050 Free article.

52

New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies.

Qi W, Colarusso A, Olombrada M, Parrilli E, Patrignani A, Tutino ML, Toll-Riera M. Qi W, et al. Sci Rep. 2019 Nov 11;9(1):16444. doi: 10.1038/s41598-019-52832-z. Sci Rep. 2019. PMID: 31712730 Free PMC article.

53

RNA-Seq Data Analysis: From Raw Data Quality Control to Differential Expression Analysis.

Qi W, Schlapbach R, Rehrauer H. Qi W, et al. Methods Mol Biol. 2017;1669:295-307. doi: 10.1007/978-1-4939-7286-9_23. Methods Mol Biol. 2017. PMID: 28936667

54

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks.

Manning SD, Motiwala AS, Springman AC, Qi W, Lacher DW, Ouellette LM, Mladonicky JM, Somsel P, Rudrik JT, Dietrich SE, Zhang W, Swaminathan B, Alland D, Whittam TS. Manning SD, et al. Among authors: qi w. Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4868-73. doi: 10.1073/pnas.0710834105. Epub 2008 Mar 10. Proc Natl Acad Sci U S A. 2008. PMID: 18332430 Free PMC article.

55

Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7.

Wick LM, Qi W, Lacher DW, Whittam TS. Wick LM, et al. Among authors: qi w. J Bacteriol. 2005 Mar;187(5):1783-91. doi: 10.1128/JB.187.5.1783-1791.2005. J Bacteriol. 2005. PMID: 15716450 Free PMC article.

56

A Phylogenomic Analysis of the Floral Transcriptomes of Sexually Deceptive and Rewarding European Orchids, Ophrys and Gymnadenia.

Piñeiro Fernández L, Byers KJRP, Cai J, Sedeek KEM, Kellenberger RT, Russo A, Qi W, Aquino Fournier C, Schlüter PM. Piñeiro Fernández L, et al. Among authors: qi w. Front Plant Sci. 2019 Nov 29;10:1553. doi: 10.3389/fpls.2019.01553. eCollection 2019. Front Plant Sci. 2019. PMID: 31850034 Free PMC article.

57

Genome sequence of the filamentous bacterium Fibrisoma limi BUZ 3T.

Filippini M, Qi W, Jaenicke S, Goesmann A, Smits TH, Bagheri HC. Filippini M, et al. Among authors: qi w. J Bacteriol. 2012 Aug;194(16):4445. doi: 10.1128/JB.00869-12. J Bacteriol. 2012. PMID: 22843583 Free PMC article.

58

Double-Stranded RNA Structural Elements Holding the Key to Translational Regulation in Cancer: The Case of Editing in RNA-Binding Motif Protein 8A.

Abukar A, Wipplinger M, Hariharan A, Sun S, Ronner M, Sculco M, Okonska A, Kresoja-Rakic J, Rehrauer H, Qi W, Beusechem VWV, Felley-Bosco E. Abukar A, et al. Among authors: qi w. Cells. 2021 Dec 15;10(12):3543. doi: 10.3390/cells10123543. Cells. 2021. PMID: 34944051 Free PMC article.

59

Single nucleotide polymorphism typing of Mycobacterium ulcerans reveals focal transmission of buruli ulcer in a highly endemic region of Ghana.

Röltgen K, Qi W, Ruf MT, Mensah-Quainoo E, Pidot SJ, Seemann T, Stinear TP, Käser M, Yeboah-Manu D, Pluschke G. Röltgen K, et al. Among authors: qi w. PLoS Negl Trop Dis. 2010 Jul 20;4(7):e751. doi: 10.1371/journal.pntd.0000751. PLoS Negl Trop Dis. 2010. PMID: 20652033 Free PMC article.

60

Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts.

Qi W, Vaughan L, Katharios P, Schlapbach R, Seth-Smith HM. Qi W, et al. Genome Biol Evol. 2016 Jun 13;8(6):1672-89. doi: 10.1093/gbe/evw111. Genome Biol Evol. 2016. PMID: 27190004 Free PMC article.

61

Emerging pathogens of gilthead seabream: characterisation and genomic analysis of novel intracellular β-proteobacteria.

Seth-Smith HM, Dourala N, Fehr A, Qi W, Katharios P, Ruetten M, Mateos JM, Nufer L, Weilenmann R, Ziegler U, Thomson NR, Schlapbach R, Vaughan L. Seth-Smith HM, et al. Among authors: qi w. ISME J. 2016 Jul;10(7):1791-803. doi: 10.1038/ismej.2015.223. Epub 2016 Feb 5. ISME J. 2016. PMID: 26849311 Free PMC article.

62

Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium.

Bergholz TM, Wick LM, Qi W, Riordan JT, Ouellette LM, Whittam TS. Bergholz TM, et al. Among authors: qi w. BMC Microbiol. 2007 Oct 29;7:97. doi: 10.1186/1471-2180-7-97. BMC Microbiol. 2007. PMID: 17967175 Free PMC article.

63

rs34567942 a Novel Susceptibility Single Nucleotide Polymorphism for Cutaneous Squamous Cell Carcinoma in Organ Transplant Recipients.

Kuzmanov A, Qi W, Stenz N, Bochud PY, Kutalik Z, Wojtowicz A, Hofbauer G. Kuzmanov A, et al. Among authors: qi w. Acta Derm Venereol. 2019 Dec 1;99(13):1303-1304. doi: 10.2340/00015555-3322. Acta Derm Venereol. 2019. PMID: 31573663 Free article. No abstract available.

64

Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium.

Filippini M, Qi W, Blom J, Goesmann A, Smits TH, Bagheri HC. Filippini M, et al. Among authors: qi w. J Bacteriol. 2012 Jul;194(13):3555. doi: 10.1128/JB.00550-12. J Bacteriol. 2012. PMID: 22689241 Free PMC article.

65

The Chlamydia suis Genome Exhibits High Levels of Diversity, Plasticity, and Mobile Antibiotic Resistance: Comparative Genomics of a Recent Livestock Cohort Shows Influence of Treatment Regimes.

Seth-Smith HM, Wanninger S, Bachmann N, Marti H, Qi W, Donati M, di Francesco A, Polkinghorne A, Borel N. Seth-Smith HM, et al. Among authors: qi w. Genome Biol Evol. 2017 Mar 1;9(3):750-760. doi: 10.1093/gbe/evx043. Genome Biol Evol. 2017. PMID: 28338777 Free PMC article.

66

Genetic diversity in Campylobacter jejuni is associated with differential colonization of broiler chickens and C57BL/6J IL10-deficient mice.

Wilson DL, Rathinam VAK, Qi W, Wick LM, Landgraf J, Bell JA, Plovanich-Jones A, Parrish J, Finley RL, Mansfield LS, Linz JE. Wilson DL, et al. Among authors: qi w. Microbiology (Reading). 2010 Jul;156(Pt 7):2046-2057. doi: 10.1099/mic.0.035717-0. Epub 2010 Apr 1. Microbiology (Reading). 2010. PMID: 20360176 Free PMC article.

67

Analysis of Plasmodium falciparum var genes expressed in children from Papua New Guinea.

Falk N, Kaestli M, Qi W, Ott M, Baea K, Cortés A, Beck HP. Falk N, et al. Among authors: qi w. J Infect Dis. 2009 Aug 1;200(3):347-56. doi: 10.1086/600071. J Infect Dis. 2009. PMID: 19552523 Free article.

68

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.

Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, Münsterkötter M, Nelson D, O'donnell K, Ouellet T, Qi W, Quesneville H, Roncero MI, Seong KY, Tetko IV, Urban M, Waalwijk C, Ward TJ, Yao J, Birren BW, Kistler HC. Cuomo CA, et al. Among authors: qi w. Science. 2007 Sep 7;317(5843):1400-2. doi: 10.1126/science.1143708. Science. 2007. PMID: 17823352

69

The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence.

Norling M, Bishop RP, Pelle R, Qi W, Henson S, Drábek EF, Tretina K, Odongo D, Mwaura S, Njoroge T, Bongcam-Rudloff E, Daubenberger CA, Silva JC. Norling M, et al. Among authors: qi w. BMC Genomics. 2015 Sep 24;16:729. doi: 10.1186/s12864-015-1910-9. BMC Genomics. 2015. PMID: 26403690 Free PMC article.

70

An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia.

Spycher C, Herman EK, Morf L, Qi W, Rehrauer H, Aquino Fournier C, Dacks JB, Hehl AB. Spycher C, et al. Among authors: qi w. Mol Microbiol. 2013 May;88(4):754-71. doi: 10.1111/mmi.12218. Epub 2013 Apr 26. Mol Microbiol. 2013. PMID: 23617761 Free article.

71

Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis.

Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS. Alland D, et al. Among authors: qi w. J Clin Microbiol. 2007 Jan;45(1):39-46. doi: 10.1128/JCM.02483-05. Epub 2006 Nov 1. J Clin Microbiol. 2007. PMID: 17079498 Free PMC article.

72

A microarray-based system for the simultaneous analysis of single nucleotide polymorphisms in human genes involved in the metabolism of anti-malarial drugs.

Hodel EM, Ley SD, Qi W, Ariey F, Genton B, Beck HP. Hodel EM, et al. Among authors: qi w. Malar J. 2009 Dec 9;8:285. doi: 10.1186/1475-2875-8-285. Malar J. 2009. PMID: 20003204 Free PMC article.

73

Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria.

Taylor-Brown A, Pillonel T, Bridle A, Qi W, Bachmann NL, Miller TL, Greub G, Nowak B, Seth-Smith HMB, Vaughan L, Polkinghorne A. Taylor-Brown A, et al. Among authors: qi w. Environ Microbiol. 2017 May;19(5):1899-1913. doi: 10.1111/1462-2920.13694. Epub 2017 Mar 2. Environ Microbiol. 2017. PMID: 28205377

74

Functional analysis of the polyketide synthase genes in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum).

Gaffoor I, Brown DW, Plattner R, Proctor RH, Qi W, Trail F. Gaffoor I, et al. Among authors: qi w. Eukaryot Cell. 2005 Nov;4(11):1926-33. doi: 10.1128/EC.4.11.1926-1933.2005. Eukaryot Cell. 2005. PMID: 16278459 Free PMC article.

75

Microarray analysis of transcript accumulation during perithecium development in the filamentous fungus Gibberella zeae (anamorph Fusarium graminearum).

Qi W, Kwon C, Trail F. Qi W, et al. Mol Genet Genomics. 2006 Jul;276(1):87-100. doi: 10.1007/s00438-006-0125-9. Epub 2006 Jun 2. Mol Genet Genomics. 2006. PMID: 16741730

76

Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.

Katharios P, Seth-Smith HM, Fehr A, Mateos JM, Qi W, Richter D, Nufer L, Ruetten M, Guevara Soto M, Ziegler U, Thomson NR, Schlapbach R, Vaughan L. Katharios P, et al. Among authors: qi w. Sci Rep. 2015 Dec 7;5:17609. doi: 10.1038/srep17609. Sci Rep. 2015. PMID: 26639610 Free PMC article.

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