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Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey.
Harris SR, Cole MJ, Spiteri G, Sánchez-Busó L, Golparian D, Jacobsson S, Goater R, Abudahab K, Yeats CA, Bercot B, Borrego MJ, Crowley B, Stefanelli P, Tripodo F, Abad R, Aanensen DM, Unemo M; Euro-GASP study group. Harris SR, et al. Among authors: abudahab k. Lancet Infect Dis. 2018 Jul;18(7):758-768. doi: 10.1016/S1473-3099(18)30225-1. Epub 2018 May 15. Lancet Infect Dis. 2018. PMID: 29776807 Free PMC article.
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.
Sánchez-Busó L, Yeats CA, Taylor B, Goater RJ, Underwood A, Abudahab K, Argimón S, Ma KC, Mortimer TD, Golparian D, Cole MJ, Grad YH, Martin I, Raphael BH, Shafer WM, Town K, Wi T, Harris SR, Unemo M, Aanensen DM. Sánchez-Busó L, et al. Among authors: abudahab k. Genome Med. 2021 Apr 19;13(1):61. doi: 10.1186/s13073-021-00858-2. Genome Med. 2021. PMID: 33875000 Free PMC article.
Europe-wide expansion and eradication of multidrug-resistant Neisseria gonorrhoeae lineages: a genomic surveillance study.
Sánchez-Busó L, Cole MJ, Spiteri G, Day M, Jacobsson S, Golparian D, Sajedi N, Yeats CA, Abudahab K, Underwood A, Bluemel B, Aanensen DM, Unemo M; Centre for Genomic Pathogen Surveillance and the Euro-GASP study group. Sánchez-Busó L, et al. Among authors: abudahab k. Lancet Microbe. 2022 Jun;3(6):e452-e463. doi: 10.1016/S2666-5247(22)00044-1. Epub 2022 May 10. Lancet Microbe. 2022. PMID: 35659907 Free article.
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch.
Argimón S, Yeats CA, Goater RJ, Abudahab K, Taylor B, Underwood A, Sánchez-Busó L, Wong VK, Dyson ZA, Nair S, Park SE, Marks F, Page AJ, Keane JA, Baker S, Holt KE, Dougan G, Aanensen DM. Argimón S, et al. Among authors: abudahab k. Nat Commun. 2021 May 17;12(1):2879. doi: 10.1038/s41467-021-23091-2. Nat Commun. 2021. PMID: 34001879 Free PMC article.
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Argimón S, David S, Underwood A, Abrudan M, Wheeler NE, Kekre M, Abudahab K, Yeats CA, Goater R, Taylor B, Harste H, Muddyman D, Feil EJ, Brisse S, Holt K, Donado-Godoy P, Ravikumar KL, Okeke IN, Carlos C, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Argimón S, et al. Among authors: abudahab k. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S325-S335. doi: 10.1093/cid/ciab784. Clin Infect Dis. 2021. PMID: 34850838 Free PMC article.
Phandango: an interactive viewer for bacterial population genomics.
Hadfield J, Croucher NJ, Goater RJ, Abudahab K, Aanensen DM, Harris SR. Hadfield J, et al. Among authors: abudahab k. Bioinformatics. 2018 Jan 15;34(2):292-293. doi: 10.1093/bioinformatics/btx610. Bioinformatics. 2018. PMID: 29028899 Free PMC article.
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014.
Chilam J, Argimón S, Limas MT, Masim ML, Gayeta JM, Lagrada ML, Olorosa AM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC; Philippines Antimicrobial Resistance Surveillance Program. Chilam J, et al. Among authors: abudahab k. Western Pac Surveill Response J. 2021 Apr 28;12(2):4-18. doi: 10.5365/wpsar.2020.11.1.006. eCollection 2021 Apr-Jun. Western Pac Surveill Response J. 2021. PMID: 34540307 Free PMC article.
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013-2014.
Chilam J, Argimón S, Limas MT, Masim ML, Gayeta JM, Lagrada ML, Olorosa AM, Cohen V, Hernandez LT, Jeffrey B, Abudahab K, Hufano CM, Sia SB, Holden MTG, Stelling J, Aanensen DM, Carlos CC; Philippines Antimicrobial Resistance Surveillance Program. Chilam J, et al. Among authors: abudahab k. Western Pac Surveill Response J. 2021 Oct 27;12(4):1-15. doi: 10.5365/wpsar.2021.12.4.863. eCollection 2021 Oct-Dec. Western Pac Surveill Response J. 2021. PMID: 35251744 Free PMC article.
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography.
Argimón S, Abudahab K, Goater RJE, Fedosejev A, Bhai J, Glasner C, Feil EJ, Holden MTG, Yeats CA, Grundmann H, Spratt BG, Aanensen DM. Argimón S, et al. Among authors: abudahab k. Microb Genom. 2016 Nov 30;2(11):e000093. doi: 10.1099/mgen.0.000093. eCollection 2016 Nov. Microb Genom. 2016. PMID: 28348833 Free PMC article.
51 results