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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Mayer G, Müller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glöckner FO, Lange M, Arend D, Beier S, Junker A, Scholz U, Schüler D, Kestler HA, Wibberg D, Pühler A, Twardziok S, Eils J, Eils R, Hoffmann S, Eisenacher M, Turewicz M. Mayer G, et al. Among authors: arend d. Brief Bioinform. 2021 Sep 2;22(5):bbab010. doi: 10.1093/bib/bbab010. Brief Bioinform. 2021. PMID: 33589928 Free PMC article.
e!DAL--a framework to store, share and publish research data.
Arend D, Lange M, Chen J, Colmsee C, Flemming S, Hecht D, Scholz U. Arend D, et al. BMC Bioinformatics. 2014 Jun 24;15:214. doi: 10.1186/1471-2105-15-214. BMC Bioinformatics. 2014. PMID: 24958009 Free PMC article.
Measures for interoperability of phenotypic data: minimum information requirements and formatting.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P. Ćwiek-Kupczyńska H, et al. Among authors: arend d. Plant Methods. 2016 Nov 9;12:44. doi: 10.1186/s13007-016-0144-4. eCollection 2016. Plant Methods. 2016. PMID: 27843484 Free PMC article.
From plant genomes to phenotypes.
Bolger M, Schwacke R, Gundlach H, Schmutzer T, Chen J, Arend D, Oppermann M, Weise S, Lange M, Fiorani F, Spannagl M, Scholz U, Mayer K, Usadel B. Bolger M, et al. Among authors: arend d. J Biotechnol. 2017 Nov 10;261:46-52. doi: 10.1016/j.jbiotec.2017.06.003. Epub 2017 Jun 9. J Biotechnol. 2017. PMID: 28602791 Free article. Review.
Computational aspects underlying genome to phenome analysis in plants.
Bolger AM, Poorter H, Dumschott K, Bolger ME, Arend D, Osorio S, Gundlach H, Mayer KFX, Lange M, Scholz U, Usadel B. Bolger AM, et al. Among authors: arend d. Plant J. 2019 Jan;97(1):182-198. doi: 10.1111/tpj.14179. Plant J. 2019. PMID: 30500991 Free PMC article. Review.
Programmatic Access to FAIRified Digital Plant Genetic Resources.
Ghaffar M, Schüler D, König P, Arend D, Junker A, Scholz U, Lange M. Ghaffar M, et al. Among authors: arend d. J Integr Bioinform. 2020 Jan 8;16(4):20190060. doi: 10.1515/jib-2019-0060. J Integr Bioinform. 2020. PMID: 31913851 Free PMC article.
Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte MA, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı Rez-Gonzalez R, Ramšak Ž, Reif JC, Rocca-Serra P, Sansone SA, Scholz U, Tardieu F, Uauy C, Usadel B, Visser RGF, Weise S, Kersey PJ, Miguel CM, Adam-Blondon AF, Pommier C. Papoutsoglou EA, et al. Among authors: arend d. New Phytol. 2020 Jul;227(1):260-273. doi: 10.1111/nph.16544. Epub 2020 Apr 25. New Phytol. 2020. PMID: 32171029 Free PMC article.
26 results