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SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data.
BMC Bioinformatics. 2021 Mar 22;22(1):140. doi: 10.1186/s12859-021-04009-7.
BMC Bioinformatics. 2021.
PMID: 33752599
Free PMC article.
Resolution of polycistronic RNA by SL2 trans-splicing is a widely conserved nematode trait.
Wenzel M, Johnston C, Müller B, Pettitt J, Connolly B.
Wenzel M, et al.
RNA. 2020 Dec;26(12):1891-1904. doi: 10.1261/rna.076414.120. Epub 2020 Sep 4.
RNA. 2020.
PMID: 32887788
Free PMC article.
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A high-throughput screen for the identification of compounds that inhibit nematode gene expression by targeting spliced leader trans-splicing.
Pandarakalam GC, Speake M, McElroy S, Alturkistani A, Philippe L, Pettitt J, Müller B, Connolly B.
Pandarakalam GC, et al.
Int J Parasitol Drugs Drug Resist. 2019 Aug;10:28-37. doi: 10.1016/j.ijpddr.2019.04.001. Epub 2019 Apr 5.
Int J Parasitol Drugs Drug Resist. 2019.
PMID: 31015150
Free PMC article.
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Operons are a conserved feature of nematode genomes.
Pettitt J, Philippe L, Sarkar D, Johnston C, Gothe HJ, Massie D, Connolly B, Müller B.
Pettitt J, et al.
Genetics. 2014 Aug;197(4):1201-11. doi: 10.1534/genetics.114.162875. Epub 2014 Jun 14.
Genetics. 2014.
PMID: 24931407
Free PMC article.
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