Bader GD - Search Results

1

Predicting physiologically relevant SH3 domain mediated protein-protein interactions in yeast.

Jain S, Bader GD. Jain S, et al. Among authors: bader gd. Bioinformatics. 2016 Jun 15;32(12):1865-72. doi: 10.1093/bioinformatics/btw045. Epub 2016 Feb 9. Bioinformatics. 2016. PMID: 26861823 Free PMC article.

2

BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.

Bader GD, Hogue CW. Bader GD, et al. Bioinformatics. 2000 May;16(5):465-77. doi: 10.1093/bioinformatics/16.5.465. Bioinformatics. 2000. PMID: 10871269

3

A specificity map for the PDZ domain family.

Tonikian R, Zhang Y, Sazinsky SL, Currell B, Yeh JH, Reva B, Held HA, Appleton BA, Evangelista M, Wu Y, Xin X, Chan AC, Seshagiri S, Lasky LA, Sander C, Boone C, Bader GD, Sidhu SS. Tonikian R, et al. Among authors: bader gd. PLoS Biol. 2008 Sep 30;6(9):e239. doi: 10.1371/journal.pbio.0060239. PLoS Biol. 2008. PMID: 18828675 Free PMC article.

4

Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins.

Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Currell B, Seshagiri S, Yu H, Winsor B, Vidal M, Gerstein MB, Bader GD, Volkmer R, Cesareni G, Drubin DG, Kim PM, Sidhu SS, Boone C. Tonikian R, et al. Among authors: bader gd. PLoS Biol. 2009 Oct;7(10):e1000218. doi: 10.1371/journal.pbio.1000218. Epub 2009 Oct 20. PLoS Biol. 2009. PMID: 19841731 Free PMC article.

5

Cytoscape Web: an interactive web-based network browser.

Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Lopes CT, et al. Among authors: bader gd. Bioinformatics. 2010 Sep 15;26(18):2347-8. doi: 10.1093/bioinformatics/btq430. Epub 2010 Jul 23. Bioinformatics. 2010. PMID: 20656902 Free PMC article.

6

Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing.

Ernst A, Gfeller D, Kan Z, Seshagiri S, Kim PM, Bader GD, Sidhu SS. Ernst A, et al. Among authors: bader gd. Mol Biosyst. 2010 Oct;6(10):1782-90. doi: 10.1039/c0mb00061b. Epub 2010 Aug 11. Mol Biosyst. 2010. PMID: 20714644

7

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.

Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD. Montojo J, et al. Among authors: bader gd. Bioinformatics. 2010 Nov 15;26(22):2927-8. doi: 10.1093/bioinformatics/btq562. Epub 2010 Oct 5. Bioinformatics. 2010. PMID: 20926419 Free PMC article.

8

Proteome scanning to predict PDZ domain interactions using support vector machines.

Hui S, Bader GD. Hui S, et al. Among authors: bader gd. BMC Bioinformatics. 2010 Oct 12;11:507. doi: 10.1186/1471-2105-11-507. BMC Bioinformatics. 2010. PMID: 20939902 Free PMC article.

9

An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology.

Jain S, Bader GD. Jain S, et al. Among authors: bader gd. BMC Bioinformatics. 2010 Nov 15;11:562. doi: 10.1186/1471-2105-11-562. BMC Bioinformatics. 2010. PMID: 21078182 Free PMC article.

10

A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence.

Shao X, Tan CS, Voss C, Li SS, Deng N, Bader GD. Shao X, et al. Among authors: bader gd. Bioinformatics. 2011 Feb 1;27(3):383-90. doi: 10.1093/bioinformatics/btq657. Epub 2010 Dec 2. Bioinformatics. 2011. PMID: 21127034 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

345 results

Search Page