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OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.
Eastman P, Swails J, Chodera JD, McGibbon RT, Zhao Y, Beauchamp KA, Wang LP, Simmonett AC, Harrigan MP, Stern CD, Wiewiora RP, Brooks BR, Pande VS. Eastman P, et al. Among authors: beauchamp ka. PLoS Comput Biol. 2017 Jul 26;13(7):e1005659. doi: 10.1371/journal.pcbi.1005659. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28746339 Free PMC article.
OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation.
Eastman P, Friedrichs MS, Chodera JD, Radmer RJ, Bruns CM, Ku JP, Beauchamp KA, Lane TJ, Wang LP, Shukla D, Tye T, Houston M, Stich T, Klein C, Shirts MR, Pande VS. Eastman P, et al. Among authors: beauchamp ka. J Chem Theory Comput. 2013 Jan 8;9(1):461-469. doi: 10.1021/ct300857j. Epub 2012 Oct 18. J Chem Theory Comput. 2013. PMID: 23316124 Free PMC article.
MSMBuilder: Statistical Models for Biomolecular Dynamics.
Harrigan MP, Sultan MM, Hernández CX, Husic BE, Eastman P, Schwantes CR, Beauchamp KA, McGibbon RT, Pande VS. Harrigan MP, et al. Among authors: beauchamp ka. Biophys J. 2017 Jan 10;112(1):10-15. doi: 10.1016/j.bpj.2016.10.042. Biophys J. 2017. PMID: 28076801 Free PMC article.
46 results