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Approximate Bayesian computation in population genetics.
Beaumont MA, Zhang W, Balding DJ. Beaumont MA, et al. Genetics. 2002 Dec;162(4):2025-35. Genetics. 2002. PMID: 12524368 Free PMC article.
PopABC: a program to infer historical demographic parameters.
Lopes JS, Balding D, Beaumont MA. Lopes JS, et al. Bioinformatics. 2009 Oct 15;25(20):2747-9. doi: 10.1093/bioinformatics/btp487. Epub 2009 Aug 13. Bioinformatics. 2009. PMID: 19679678
Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation.
Lopes JS, Arenas M, Posada D, Beaumont MA. Lopes JS, et al. Among authors: beaumont ma. Heredity (Edinb). 2014 Mar;112(3):255-64. doi: 10.1038/hdy.2013.101. Epub 2013 Oct 23. Heredity (Edinb). 2014. PMID: 24149652 Free PMC article.
CodABC: a computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate Bayesian computation.
Arenas M, Lopes JS, Beaumont MA, Posada D. Arenas M, et al. Among authors: beaumont ma. Mol Biol Evol. 2015 Apr;32(4):1109-12. doi: 10.1093/molbev/msu411. Epub 2015 Jan 9. Mol Biol Evol. 2015. PMID: 25577191 Free PMC article.
Bayesian estimation of recent migration rates after a spatial expansion.
Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, Excoffier L. Hamilton G, et al. Genetics. 2005 May;170(1):409-17. doi: 10.1534/genetics.104.034199. Epub 2005 Feb 16. Genetics. 2005. PMID: 15716508 Free PMC article.
On the validity of nested clade phylogeographical analysis.
Beaumont MA, Panchal M. Beaumont MA, et al. Mol Ecol. 2008 Jun;17(11):2563-5. doi: 10.1111/j.1365-294X.2008.03786.x. Epub 2008 May 8. Mol Ecol. 2008. PMID: 18482264 No abstract available.
In defence of model-based inference in phylogeography.
Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, Cornuet JM, Huelsenbeck J, Foll M, Yang Z, Rousset F, Balding D, Excoffier L. Beaumont MA, et al. Mol Ecol. 2010 Feb;19(3):436-446. doi: 10.1111/j.1365-294X.2009.04515.x. Epub 2010 Jan 11. Mol Ecol. 2010. PMID: 29284924 Free PMC article.
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