Beerenwinkel N - Search Results

1

Advances in understanding tumour evolution through single-cell sequencing.

Kuipers J, Jahn K, Beerenwinkel N. Kuipers J, et al. Among authors: beerenwinkel n. Biochim Biophys Acta Rev Cancer. 2017 Apr;1867(2):127-138. doi: 10.1016/j.bbcan.2017.02.001. Epub 2017 Feb 11. Biochim Biophys Acta Rev Cancer. 2017. PMID: 28193548 Free PMC article. Review.

2

Cancer evolution: mathematical models and computational inference.

Beerenwinkel N, Schwarz RF, Gerstung M, Markowetz F. Beerenwinkel N, et al. Syst Biol. 2015 Jan;64(1):e1-25. doi: 10.1093/sysbio/syu081. Epub 2014 Oct 7. Syst Biol. 2015. PMID: 25293804 Free PMC article. Review.

3

Tree inference for single-cell data.

Jahn K, Kuipers J, Beerenwinkel N. Jahn K, et al. Among authors: beerenwinkel n. Genome Biol. 2016 May 5;17:86. doi: 10.1186/s13059-016-0936-x. Genome Biol. 2016. PMID: 27149953 Free PMC article.

4

Large-scale inference of conjunctive Bayesian networks.

Montazeri H, Kuipers J, Kouyos R, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Beerenwinkel N; Swiss HIV Cohort Study. Montazeri H, et al. Among authors: beerenwinkel n. Bioinformatics. 2016 Sep 1;32(17):i727-i735. doi: 10.1093/bioinformatics/btw459. Bioinformatics. 2016. PMID: 27587695

5

pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Progression Dynamics.

Cristea S, Kuipers J, Beerenwinkel N. Cristea S, et al. Among authors: beerenwinkel n. J Comput Biol. 2017 Jun;24(6):603-615. doi: 10.1089/cmb.2016.0171. Epub 2016 Dec 12. J Comput Biol. 2017. PMID: 27936934

6

Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.

Hofmann AL, Behr J, Singer J, Kuipers J, Beisel C, Schraml P, Moch H, Beerenwinkel N. Hofmann AL, et al. Among authors: beerenwinkel n. BMC Bioinformatics. 2017 Jan 3;18(1):8. doi: 10.1186/s12859-016-1417-7. BMC Bioinformatics. 2017. PMID: 28049408 Free PMC article.

7

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors.

Kuipers J, Jahn K, Raphael BJ, Beerenwinkel N. Kuipers J, et al. Among authors: beerenwinkel n. Genome Res. 2017 Nov;27(11):1885-1894. doi: 10.1101/gr.220707.117. Epub 2017 Oct 13. Genome Res. 2017. PMID: 29030470 Free PMC article.

8

Improved pathway reconstruction from RNA interference screens by exploiting off-target effects.

Srivatsa S, Kuipers J, Schmich F, Eicher S, Emmenlauer M, Dehio C, Beerenwinkel N. Srivatsa S, et al. Among authors: beerenwinkel n. Bioinformatics. 2018 Jul 1;34(13):i519-i527. doi: 10.1093/bioinformatics/bty240. Bioinformatics. 2018. PMID: 29950000 Free PMC article.

9

Mutational interactions define novel cancer subgroups.

Kuipers J, Thurnherr T, Moffa G, Suter P, Behr J, Goosen R, Christofori G, Beerenwinkel N. Kuipers J, et al. Among authors: beerenwinkel n. Nat Commun. 2018 Oct 19;9(1):4353. doi: 10.1038/s41467-018-06867-x. Nat Commun. 2018. PMID: 30341300 Free PMC article.

10

Single cell network analysis with a mixture of Nested Effects Models.

Pirkl M, Beerenwinkel N. Pirkl M, et al. Among authors: beerenwinkel n. Bioinformatics. 2018 Sep 1;34(17):i964-i971. doi: 10.1093/bioinformatics/bty602. Bioinformatics. 2018. PMID: 30423100 Free PMC article.

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