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Uncovering of cytochrome P450 anatomy by SecStrAnnotator.
Midlik A, Navrátilová V, Moturu TR, Koča J, Svobodová R, Berka K. Midlik A, et al. Among authors: berka k. Sci Rep. 2021 Jun 11;11(1):12345. doi: 10.1038/s41598-021-91494-8. Sci Rep. 2021. PMID: 34117311 Free PMC article.
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels.
Berka K, Hanák O, Sehnal D, Banás P, Navrátilová V, Jaiswal D, Ionescu CM, Svobodová Vareková R, Koca J, Otyepka M. Berka K, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W222-7. doi: 10.1093/nar/gks363. Epub 2012 May 2. Nucleic Acids Res. 2012. PMID: 22553366 Free PMC article.
MOLE 2.0: advanced approach for analysis of biomacromolecular channels.
Sehnal D, Svobodová Vařeková R, Berka K, Pravda L, Navrátilová V, Banáš P, Ionescu CM, Otyepka M, Koča J. Sehnal D, et al. Among authors: berka k. J Cheminform. 2013 Aug 16;5(1):39. doi: 10.1186/1758-2946-5-39. J Cheminform. 2013. PMID: 23953065 Free PMC article.
Behavior of human cytochromes P450 on lipid membranes.
Berka K, Paloncýová M, Anzenbacher P, Otyepka M. Berka K, et al. J Phys Chem B. 2013 Oct 3;117(39):11556-64. doi: 10.1021/jp4059559. Epub 2013 Sep 13. J Phys Chem B. 2013. PMID: 23987570
Anatomy of enzyme channels.
Pravda L, Berka K, Svobodová Vařeková R, Sehnal D, Banáš P, Laskowski RA, Koča J, Otyepka M. Pravda L, et al. Among authors: berka k. BMC Bioinformatics. 2014 Nov 18;15(1):379. doi: 10.1186/s12859-014-0379-x. BMC Bioinformatics. 2014. PMID: 25403510 Free PMC article.
The Role of Protein-Protein and Protein-Membrane Interactions on P450 Function.
Scott EE, Wolf CR, Otyepka M, Humphreys SC, Reed JR, Henderson CJ, McLaughlin LA, Paloncýová M, Navrátilová V, Berka K, Anzenbacher P, Dahal UP, Barnaba C, Brozik JA, Jones JP, Estrada DF, Laurence JS, Park JW, Backes WL. Scott EE, et al. Among authors: berka k. Drug Metab Dispos. 2016 Apr;44(4):576-90. doi: 10.1124/dmd.115.068569. Epub 2016 Feb 5. Drug Metab Dispos. 2016. PMID: 26851242 Free PMC article. Review.
95 results