Borodovsky M - Search Results

1

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.

Hoff KJ, Lange S, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Among authors: borodovsky m. Bioinformatics. 2016 Mar 1;32(5):767-9. doi: 10.1093/bioinformatics/btv661. Epub 2015 Nov 11. Bioinformatics. 2016. PMID: 26559507 Free PMC article.

2

GeneMark.hmm: new solutions for gene finding.

Lukashin AV, Borodovsky M. Lukashin AV, et al. Among authors: borodovsky m. Nucleic Acids Res. 1998 Feb 15;26(4):1107-15. doi: 10.1093/nar/26.4.1107. Nucleic Acids Res. 1998. PMID: 9461475 Free PMC article.

3

Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.

Shmatkov AM, Melikyan AA, Chernousko FL, Borodovsky M. Shmatkov AM, et al. Among authors: borodovsky m. Bioinformatics. 1999 Nov;15(11):874-86. doi: 10.1093/bioinformatics/15.11.874. Bioinformatics. 1999. PMID: 10743554

4

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Besemer J, Lomsadze A, Borodovsky M. Besemer J, et al. Among authors: borodovsky m. Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607. Nucleic Acids Res. 2001. PMID: 11410670 Free PMC article.

5

Improving gene annotation of complete viral genomes.

Mills R, Rozanov M, Lomsadze A, Tatusova T, Borodovsky M. Mills R, et al. Among authors: borodovsky m. Nucleic Acids Res. 2003 Dec 1;31(23):7041-55. doi: 10.1093/nar/gkg878. Nucleic Acids Res. 2003. PMID: 14627837 Free PMC article.

6

Effects of choice of DNA sequence model structure on gene identification accuracy.

Azad RK, Borodovsky M. Azad RK, et al. Among authors: borodovsky m. Bioinformatics. 2004 May 1;20(7):993-1005. doi: 10.1093/bioinformatics/bth028. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751980

7

Gene identification in novel eukaryotic genomes by self-training algorithm.

Lomsadze A, Ter-Hovhannisyan V, Chernoff YO, Borodovsky M. Lomsadze A, et al. Among authors: borodovsky m. Nucleic Acids Res. 2005 Nov 28;33(20):6494-506. doi: 10.1093/nar/gki937. Print 2005. Nucleic Acids Res. 2005. PMID: 16314312 Free PMC article.

8

Prokaryotic gene prediction using GeneMark and GeneMark.hmm.

Borodovsky M, Mills R, Besemer J, Lomsadze A. Borodovsky M, et al. Curr Protoc Bioinformatics. 2003 May;Chapter 4:Unit4.5. doi: 10.1002/0471250953.bi0405s01. Curr Protoc Bioinformatics. 2003. PMID: 18428700

9

Eukaryotic gene prediction using GeneMark.hmm.

Borodovsky M, Lomsadze A, Ivanov N, Mills R. Borodovsky M, et al. Curr Protoc Bioinformatics. 2003 May;Chapter 4:Unit4.6. doi: 10.1002/0471250953.bi0406s01. Curr Protoc Bioinformatics. 2003. PMID: 18428701

10

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.

Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. Ter-Hovhannisyan V, et al. Among authors: borodovsky m. Genome Res. 2008 Dec;18(12):1979-90. doi: 10.1101/gr.081612.108. Epub 2008 Aug 29. Genome Res. 2008. PMID: 18757608 Free PMC article.

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