Bruggeman FJ - Search Results

1

Tracing the molecular basis of transcriptional dynamics in noisy data by using an experiment-based mathematical model.

Rybakova KN, Tomaszewska A, van Mourik S, Blom J, Westerhoff HV, Carlberg C, Bruggeman FJ. Rybakova KN, et al. Among authors: bruggeman fj. Nucleic Acids Res. 2015 Jan;43(1):153-61. doi: 10.1093/nar/gku1272. Epub 2014 Dec 3. Nucleic Acids Res. 2015. PMID: 25477385 Free PMC article.

2

Macromolecular intelligence in microorganisms.

Bruggeman FJ, van Heeswijk WC, Boogerd FC, Westerhoff HV. Bruggeman FJ, et al. Biol Chem. 2000 Sep-Oct;381(9-10):965-72. doi: 10.1515/BC.2000.119. Biol Chem. 2000. PMID: 11076029 Review.

3

A turbo engine with automatic transmission? How to marry chemicomotion to the subtleties and robustness of life.

Koefoed S, Otten M, Koebmann B, Bruggeman F, Bakker B, Snoep J, Krab K, van Spanning R, van Verseveld H, Jensen P, Koster J, Westerhoff H. Koefoed S, et al. Biochim Biophys Acta. 2002 Sep 10;1555(1-3):75-82. doi: 10.1016/s0005-2728(02)00258-x. Biochim Biophys Acta. 2002. PMID: 12206895 Free article.

4

Network-based selectivity of antiparasitic inhibitors.

Bakker BM, Assmus HE, Bruggeman F, Haanstra JR, Klipp E, Westerhoff H. Bakker BM, et al. Mol Biol Rep. 2002;29(1-2):1-5. doi: 10.1023/a:1020397513646. Mol Biol Rep. 2002. PMID: 12241036 No abstract available.

5

ECA: control in ecosystems.

Westerhoff HV, Getz WM, Bruggeman F, Hofmeyr JH, Rohwer JM, Snoep JL. Westerhoff HV, et al. Mol Biol Rep. 2002;29(1-2):113-7. doi: 10.1023/a:1020396906319. Mol Biol Rep. 2002. PMID: 12241039

6

Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.

Kholodenko BN, Kiyatkin A, Bruggeman FJ, Sontag E, Westerhoff HV, Hoek JB. Kholodenko BN, et al. Among authors: bruggeman fj. Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12841-6. doi: 10.1073/pnas.192442699. Epub 2002 Sep 19. Proc Natl Acad Sci U S A. 2002. PMID: 12242336 Free PMC article.

7

Modular response analysis of cellular regulatory networks.

Bruggeman FJ, Westerhoff HV, Hoek JB, Kholodenko BN. Bruggeman FJ, et al. J Theor Biol. 2002 Oct 21;218(4):507-20. J Theor Biol. 2002. PMID: 12384053

8

Principles behind the multifarious control of signal transduction. ERK phosphorylation and kinase/phosphatase control.

Hornberg JJ, Bruggeman FJ, Binder B, Geest CR, de Vaate AJ, Lankelma J, Heinrich R, Westerhoff HV. Hornberg JJ, et al. Among authors: bruggeman fj. FEBS J. 2005 Jan;272(1):244-58. doi: 10.1111/j.1432-1033.2004.04404.x. FEBS J. 2005. PMID: 15634347 Free article.

9

The multifarious short-term regulation of ammonium assimilation of Escherichia coli: dissection using an in silico replica.

Bruggeman FJ, Boogerd FC, Westerhoff HV. Bruggeman FJ, et al. FEBS J. 2005 Apr;272(8):1965-85. doi: 10.1111/j.1742-4658.2005.04626.x. FEBS J. 2005. PMID: 15819889 Free article.

10

Control of MAPK signalling: from complexity to what really matters.

Hornberg JJ, Binder B, Bruggeman FJ, Schoeberl B, Heinrich R, Westerhoff HV. Hornberg JJ, et al. Among authors: bruggeman fj. Oncogene. 2005 Aug 25;24(36):5533-42. doi: 10.1038/sj.onc.1208817. Oncogene. 2005. PMID: 16007170

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