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RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Łach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J Jr, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B 2nd, Xiao Y, Xu X, Zhang D, Zok T, Westhof E. Miao Z, et al. Among authors: bujnicki jm. RNA. 2017 May;23(5):655-672. doi: 10.1261/rna.060368.116. Epub 2017 Jan 30. RNA. 2017. PMID: 28138060 Free PMC article.
MODOMICS: a database of RNA modification pathways.
Dunin-Horkawicz S, Czerwoniec A, Gajda MJ, Feder M, Grosjean H, Bujnicki JM. Dunin-Horkawicz S, et al. Among authors: bujnicki jm. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D145-9. doi: 10.1093/nar/gkj084. Nucleic Acids Res. 2006. PMID: 16381833 Free PMC article.
Phylogenomic analysis of the GIY-YIG nuclease superfamily.
Dunin-Horkawicz S, Feder M, Bujnicki JM. Dunin-Horkawicz S, et al. Among authors: bujnicki jm. BMC Genomics. 2006 Apr 28;7:98. doi: 10.1186/1471-2164-7-98. BMC Genomics. 2006. PMID: 16646971 Free PMC article.
MODOMICS: a database of RNA modification pathways. 2008 update.
Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K. Czerwoniec A, et al. Among authors: bujnicki jm. Nucleic Acids Res. 2009 Jan;37(Database issue):D118-21. doi: 10.1093/nar/gkn710. Epub 2008 Oct 14. Nucleic Acids Res. 2009. PMID: 18854352 Free PMC article.
RNA and protein 3D structure modeling: similarities and differences.
Rother K, Rother M, Boniecki M, Puton T, Bujnicki JM. Rother K, et al. Among authors: bujnicki jm. J Mol Model. 2011 Sep;17(9):2325-36. doi: 10.1007/s00894-010-0951-x. Epub 2011 Jan 22. J Mol Model. 2011. PMID: 21258831 Free PMC article. Review.
341 results