Catanzaro D - Search Results

1

Assessing the applicability of the GTR nucleotide substitution model through simulations.

Gatto L, Catanzaro D, Milinkovitch MC. Gatto L, et al. Among authors: catanzaro d. Evol Bioinform Online. 2007 Feb 4;2:145-55. Evol Bioinform Online. 2007. PMID: 19455208 Free PMC article.

2

A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model.

Catanzaro D, Pesenti R, Milinkovitch MC. Catanzaro D, et al. Bioinformatics. 2006 Mar 15;22(6):708-15. doi: 10.1093/bioinformatics/btk001. Epub 2006 Jan 5. Bioinformatics. 2006. PMID: 16397009

3

An ant colony optimization algorithm for phylogenetic estimation under the minimum evolution principle.

Catanzaro D, Pesenti R, Milinkovitch MC. Catanzaro D, et al. BMC Evol Biol. 2007 Nov 15;7:228. doi: 10.1186/1471-2148-7-228. BMC Evol Biol. 2007. PMID: 18005416 Free PMC article.

4

A class representative model for Pure Parsimony Haplotyping under uncertain data.

Catanzaro D, Labbé M, Porretta L. Catanzaro D, et al. PLoS One. 2011 Mar 25;6(3):e17937. doi: 10.1371/journal.pone.0017937. PLoS One. 2011. PMID: 21464966 Free PMC article.

5

A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion.

Catanzaro D, Ravi R, Schwartz R. Catanzaro D, et al. Algorithms Mol Biol. 2013 Jan 23;8(1):3. doi: 10.1186/1748-7188-8-3. Algorithms Mol Biol. 2013. PMID: 23343437 Free PMC article.

6

An integer programming formulation of the parsimonious loss of heterozygosity problem.

Catanzaro D, Labbé M, Halldórsson BV. Catanzaro D, et al. IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1391-402. doi: 10.1109/TCBB.2012.138. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24407298

7

Computer-aided human leukocyte antigen association studies: a case study for psoriasis and severe alopecia areata.

Catanzaro D, Andrien M, Labbé M, Toungouz-Nevessignsky M. Catanzaro D, et al. Hum Immunol. 2010 Aug;71(8):783-8. doi: 10.1016/j.humimm.2010.04.003. Epub 2010 May 4. Hum Immunol. 2010. PMID: 20447432

8

Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study.

Catanzaro D, Shackney SE, Schaffer AA, Schwartz R. Catanzaro D, et al. IEEE/ACM Trans Comput Biol Bioinform. 2016 Jul-Aug;13(4):643-55. doi: 10.1109/TCBB.2015.2476808. Epub 2015 Sep 4. IEEE/ACM Trans Comput Biol Bioinform. 2016. PMID: 26353381 Free PMC article.

9

An evolution strategy approach for the balanced minimum evolution problem.

Gasparin A, Camerota Verdù FJ, Catanzaro D, Castelli L. Gasparin A, et al. Among authors: catanzaro d. Bioinformatics. 2023 Nov 1;39(11):btad660. doi: 10.1093/bioinformatics/btad660. Bioinformatics. 2023. PMID: 37889263 Free PMC article.

10

Asynchronous Video Directly Observed Therapy to Monitor Short-Course Latent Tuberculosis Infection Treatment: Results of a Randomized Controlled Trial.

Garfein RS, Liu L, Cepeda J, Graves S, San Miguel S, Antonio A, Cuevas-Mota J, Mercer V, Miller M, Catanzaro DG, Rios P, Raab F, Benson CA. Garfein RS, et al. Among authors: catanzaro dg. Open Forum Infect Dis. 2024 Mar 26;11(4):ofae180. doi: 10.1093/ofid/ofae180. eCollection 2024 Apr. Open Forum Infect Dis. 2024. PMID: 38665171 Free PMC article. Clinical Trial.

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