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Genome-wide identification and differential analysis of translational initiation.
Zhang P, He D, Xu Y, Hou J, Pan BF, Wang Y, Liu T, Davis CM, Ehli EA, Tan L, Zhou F, Hu J, Yu Y, Chen X, Nguyen TM, Rosen JM, Hawke DH, Ji Z, Chen Y. Zhang P, et al. Among authors: chen x, chen y. Nat Commun. 2017 Nov 23;8(1):1749. doi: 10.1038/s41467-017-01981-8. Nat Commun. 2017. PMID: 29170441 Free PMC article.
Cistrome: an integrative platform for transcriptional regulation studies.
Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. Liu T, et al. Among authors: chen y. Genome Biol. 2011 Aug 22;12(8):R83. doi: 10.1186/gb-2011-12-8-r83. Genome Biol. 2011. PMID: 21859476 Free PMC article.
A comprehensive view of nuclear receptor cancer cistromes.
Tang Q, Chen Y, Meyer C, Geistlinger T, Lupien M, Wang Q, Liu T, Zhang Y, Brown M, Liu XS. Tang Q, et al. Among authors: chen y. Cancer Res. 2011 Nov 15;71(22):6940-7. doi: 10.1158/0008-5472.CAN-11-2091. Epub 2011 Sep 22. Cancer Res. 2011. PMID: 21940749 Free PMC article.
Systematic evaluation of factors influencing ChIP-seq fidelity.
Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, Lieb JD, Liu XS. Chen Y, et al. Nat Methods. 2012 Jun;9(6):609-14. doi: 10.1038/nmeth.1985. Epub 2012 Apr 22. Nat Methods. 2012. PMID: 22522655 Free PMC article.
XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway.
Chen X, Iliopoulos D, Zhang Q, Tang Q, Greenblatt MB, Hatziapostolou M, Lim E, Tam WL, Ni M, Chen Y, Mai J, Shen H, Hu DZ, Adoro S, Hu B, Song M, Tan C, Landis MD, Ferrari M, Shin SJ, Brown M, Chang JC, Liu XS, Glimcher LH. Chen X, et al. Among authors: chen y. Nature. 2014 Apr 3;508(7494):103-107. doi: 10.1038/nature13119. Epub 2014 Mar 23. Nature. 2014. PMID: 24670641 Free PMC article.
The Emerging Function and Mechanism of ceRNAs in Cancer.
Wang Y, Hou J, He D, Sun M, Zhang P, Yu Y, Chen Y. Wang Y, et al. Among authors: chen y. Trends Genet. 2016 Apr;32(4):211-224. doi: 10.1016/j.tig.2016.02.001. Epub 2016 Feb 24. Trends Genet. 2016. PMID: 26922301 Free PMC article. Review.
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
Qin Q, Mei S, Wu Q, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW, Liu XS. Qin Q, et al. Among authors: chen s, chen y. BMC Bioinformatics. 2016 Oct 3;17(1):404. doi: 10.1186/s12859-016-1274-4. BMC Bioinformatics. 2016. PMID: 27716038 Free PMC article.
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