Cockell SJ - Search Results

1

Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking.

Cockell SJ, Oliva B, Jackson RM. Cockell SJ, et al. Bioinformatics. 2007 Mar 1;23(5):573-81. doi: 10.1093/bioinformatics/btl661. Epub 2007 Jan 18. Bioinformatics. 2007. PMID: 17237047

2

Bayesian integration of networks without gold standards.

Weile J, James K, Hallinan J, Cockell SJ, Lord P, Wipat A, Wilkinson DJ. Weile J, et al. Among authors: cockell sj. Bioinformatics. 2012 Jun 1;28(11):1495-500. doi: 10.1093/bioinformatics/bts154. Epub 2012 Apr 6. Bioinformatics. 2012. PMID: 22492647 Free PMC article.

3

Customizable views on semantically integrated networks for systems biology.

Weile J, Pocock M, Cockell SJ, Lord P, Dewar JM, Holstein EM, Wilkinson D, Lydall D, Hallinan J, Wipat A. Weile J, et al. Among authors: cockell sj. Bioinformatics. 2011 May 1;27(9):1299-306. doi: 10.1093/bioinformatics/btr134. Epub 2011 Mar 16. Bioinformatics. 2011. PMID: 21414991 Free PMC article.

4

Integration of probabilistic functional networks without an external Gold Standard.

James K, Alsobhe A, Cockell SJ, Wipat A, Pocock M. James K, et al. Among authors: cockell sj. BMC Bioinformatics. 2022 Jul 25;23(1):302. doi: 10.1186/s12859-022-04834-4. BMC Bioinformatics. 2022. PMID: 35879662 Free PMC article.

5

An integrated dataset for in silico drug discovery.

Cockell SJ, Weile J, Lord P, Wipat C, Andriychenko D, Pocock M, Wilkinson D, Young M, Wipat A. Cockell SJ, et al. J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-116. J Integr Bioinform. 2010. PMID: 20375448

6

Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant.

Stadler LK, Hoffmann T, Tomlinson DC, Song Q, Lee T, Busby M, Nyathi Y, Gendra E, Tiede C, Flanagan K, Cockell SJ, Wipat A, Harwood C, Wagner SD, Knowles MA, Davis JJ, Keegan N, Ferrigno PK. Stadler LK, et al. Among authors: cockell sj. Protein Eng Des Sel. 2011 Sep;24(9):751-63. doi: 10.1093/protein/gzr019. Epub 2011 May 25. Protein Eng Des Sel. 2011. PMID: 21616931

7

Misincorporation by RNA polymerase is a major source of transcription pausing in vivo.

James K, Gamba P, Cockell SJ, Zenkin N. James K, et al. Among authors: cockell sj. Nucleic Acids Res. 2017 Feb 17;45(3):1105-1113. doi: 10.1093/nar/gkw969. Nucleic Acids Res. 2017. PMID: 28180286 Free PMC article.

8

Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics.

James K, Cockell SJ, Zenkin N. James K, et al. Among authors: cockell sj. Methods. 2017 May 1;120:76-84. doi: 10.1016/j.ymeth.2017.04.016. Epub 2017 Apr 21. Methods. 2017. PMID: 28434904 Review.

9

A distributed computational search strategy for the identification of diagnostics targets: application to finding aptamer targets for methicillin-resistant staphylococci.

Flanagan K, Cockell S, Harwood C, Hallinan J, Nakjang S, Lawry B, Wipat A. Flanagan K, et al. J Integr Bioinform. 2014 Jun 30;11(2):242. doi: 10.2390/biecoll-jib-2014-242. J Integr Bioinform. 2014. PMID: 24980620

10

Genetic Networks Required to Coordinate Chromosome Replication by DNA Polymerases α, δ, and ε in Saccharomyces cerevisiae.

Dubarry M, Lawless C, Banks AP, Cockell S, Lydall D. Dubarry M, et al. G3 (Bethesda). 2015 Aug 21;5(10):2187-97. doi: 10.1534/g3.115.021493. G3 (Bethesda). 2015. PMID: 26297725 Free PMC article.

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