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The CellML Metadata Framework 2.0 Specification.
Cooling MT, Hunter P. Cooling MT, et al. J Integr Bioinform. 2015 Sep 4;12(2):260. doi: 10.2390/biecoll-jib-2015-260. J Integr Bioinform. 2015. PMID: 26528558
Modelling biological modularity with CellML.
Cooling MT, Hunter P, Crampin EJ. Cooling MT, et al. IET Syst Biol. 2008 Mar;2(2):73-9. doi: 10.1049/iet-syb:20070020. IET Syst Biol. 2008. PMID: 18397118
CellML metadata standards, associated tools and repositories.
Beard DA, Britten R, Cooling MT, Garny A, Halstead MD, Hunter PJ, Lawson J, Lloyd CM, Marsh J, Miller A, Nickerson DP, Nielsen PM, Nomura T, Subramanium S, Wimalaratne SM, Yu T. Beard DA, et al. Among authors: cooling mt. Philos Trans A Math Phys Eng Sci. 2009 May 28;367(1895):1845-67. doi: 10.1098/rsta.2008.0310. Philos Trans A Math Phys Eng Sci. 2009. PMID: 19380315 Free PMC article.
A method for visualizing CellML models.
Wimalaratne SM, Halstead MD, Lloyd CM, Cooling MT, Crampin EJ, Nielsen PF. Wimalaratne SM, et al. Among authors: cooling mt. Bioinformatics. 2009 Nov 15;25(22):3012-9. doi: 10.1093/bioinformatics/btp495. Epub 2009 Aug 24. Bioinformatics. 2009. PMID: 19703920
Revision history aware repositories of computational models of biological systems.
Miller AK, Yu T, Britten R, Cooling MT, Lawson J, Cowan D, Garny A, Halstead MD, Hunter PJ, Nickerson DP, Nunns G, Wimalaratne SM, Nielsen PM. Miller AK, et al. Among authors: cooling mt. BMC Bioinformatics. 2011 Jan 14;12:22. doi: 10.1186/1471-2105-12-22. BMC Bioinformatics. 2011. PMID: 21235804 Free PMC article.
CellML 2.0.
Clerx M, Cooling MT, Cooper J, Garny A, Moyle K, Nickerson DP, Nielsen PMF, Sorby H. Clerx M, et al. Among authors: cooling mt. J Integr Bioinform. 2020 Jul 24;17(2-3):20200021. doi: 10.1515/jib-2020-0021. J Integr Bioinform. 2020. PMID: 32759406 Free PMC article.
The Physiome Model Repository 2.
Yu T, Lloyd CM, Nickerson DP, Cooling MT, Miller AK, Garny A, Terkildsen JR, Lawson J, Britten RD, Hunter PJ, Nielsen PM. Yu T, et al. Among authors: cooling mt. Bioinformatics. 2011 Mar 1;27(5):743-4. doi: 10.1093/bioinformatics/btq723. Epub 2011 Jan 6. Bioinformatics. 2011. PMID: 21216774
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