Dilthey AT - Search Results

1

Nanopore sequencing and assembly of a human genome with ultra-long reads.

Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M. Jain M, et al. Among authors: dilthey at. Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29. Nat Biotechnol. 2018. PMID: 29431738 Free PMC article.

2

De novo assembly of haplotype-resolved genomes with trio binning.

Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM. Koren S, et al. Among authors: dilthey at. Nat Biotechnol. 2018 Oct 22:10.1038/nbt.4277. doi: 10.1038/nbt.4277. Online ahead of print. Nat Biotechnol. 2018. PMID: 30346939 Free PMC article.

3

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.

Dilthey AT, Jain C, Koren S, Phillippy AM. Dilthey AT, et al. Nat Commun. 2019 Jul 11;10(1):3066. doi: 10.1038/s41467-019-10934-2. Nat Commun. 2019. PMID: 31296857 Free PMC article.

4

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.

Jain C, Dilthey A, Koren S, Aluru S, Phillippy AM. Jain C, et al. J Comput Biol. 2018 Jul;25(7):766-779. doi: 10.1089/cmb.2018.0036. Epub 2018 Apr 30. J Comput Biol. 2018. PMID: 29708767 Free PMC article.

5

HLA*LA-HLA typing from linearly projected graph alignments.

Dilthey AT, Mentzer AJ, Carapito R, Cutland C, Cereb N, Madhi SA, Rhie A, Koren S, Bahram S, McVean G, Phillippy AM. Dilthey AT, et al. Bioinformatics. 2019 Nov 1;35(21):4394-4396. doi: 10.1093/bioinformatics/btz235. Bioinformatics. 2019. PMID: 30942877 Free PMC article.

6

A fast adaptive algorithm for computing whole-genome homology maps.

Jain C, Koren S, Dilthey A, Phillippy AM, Aluru S. Jain C, et al. Bioinformatics. 2018 Sep 1;34(17):i748-i756. doi: 10.1093/bioinformatics/bty597. Bioinformatics. 2018. PMID: 30423094 Free PMC article.

7

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing.

Kim JH, Dilthey AT, Nagaraja R, Lee HS, Koren S, Dudekula D, Wood Iii WH, Piao Y, Ogurtsov AY, Utani K, Noskov VN, Shabalina SA, Schlessinger D, Phillippy AM, Larionov V. Kim JH, et al. Among authors: dilthey at. Nucleic Acids Res. 2018 Jul 27;46(13):6712-6725. doi: 10.1093/nar/gky442. Nucleic Acids Res. 2018. PMID: 29788454 Free PMC article.

8

Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data.

Curry KD, Wang Q, Nute MG, Tyshaieva A, Reeves E, Soriano S, Wu Q, Graeber E, Finzer P, Mendling W, Savidge T, Villapol S, Dilthey A, Treangen TJ. Curry KD, et al. Nat Methods. 2022 Jul;19(7):845-853. doi: 10.1038/s41592-022-01520-4. Epub 2022 Jun 30. Nat Methods. 2022. PMID: 35773532 Free PMC article.

9

Improved genome inference in the MHC using a population reference graph.

Dilthey A, Cox C, Iqbal Z, Nelson MR, McVean G. Dilthey A, et al. Nat Genet. 2015 Jun;47(6):682-8. doi: 10.1038/ng.3257. Epub 2015 Apr 27. Nat Genet. 2015. PMID: 25915597 Free PMC article.

10

NovoGraph: Human genome graph construction from multiple long-read de novo assemblies.

Biederstedt E, Oliver JC, Hansen NF, Jajoo A, Dunn N, Olson A, Busby B, Dilthey AT. Biederstedt E, et al. Among authors: dilthey at. F1000Res. 2018 Sep 3;7:1391. doi: 10.12688/f1000research.15895.2. eCollection 2018. F1000Res. 2018. PMID: 30613392 Free PMC article.

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