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Empirical threshold values for quantitative trait mapping.
Churchill GA, Doerge RW. Churchill GA, et al. Genetics. 1994 Nov;138(3):963-71. Genetics. 1994. PMID: 7851788 Free PMC article.
Naive application of permutation testing leads to inflated type I error rates.
Churchill GA, Doerge RW. Churchill GA, et al. Genetics. 2008 Jan;178(1):609-10. doi: 10.1534/genetics.107.074609. Genetics. 2008. PMID: 18202402 Free PMC article.
The Collaborative Cross, a community resource for the genetic analysis of complex traits.
Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, Beatty J, Beavis WD, Belknap JK, Bennett B, Berrettini W, Bleich A, Bogue M, Broman KW, Buck KJ, Buckler E, Burmeister M, Chesler EJ, Cheverud JM, Clapcote S, Cook MN, Cox RD, Crabbe JC, Crusio WE, Darvasi A, Deschepper CF, Doerge RW, Farber CR, Forejt J, Gaile D, Garlow SJ, Geiger H, Gershenfeld H, Gordon T, Gu J, Gu W, de Haan G, Hayes NL, Heller C, Himmelbauer H, Hitzemann R, Hunter K, Hsu HC, Iraqi FA, Ivandic B, Jacob HJ, Jansen RC, Jepsen KJ, Johnson DK, Johnson TE, Kempermann G, Kendziorski C, Kotb M, Kooy RF, Llamas B, Lammert F, Lassalle JM, Lowenstein PR, Lu L, Lusis A, Manly KF, Marcucio R, Matthews D, Medrano JF, Miller DR, Mittleman G, Mock BA, Mogil JS, Montagutelli X, Morahan G, Morris DG, Mott R, Nadeau JH, Nagase H, Nowakowski RS, O'Hara BF, Osadchuk AV, Page GP, Paigen B, Paigen K, Palmer AA, Pan HJ, Peltonen-Palotie L, Peirce J, Pomp D, Pravenec M, Prows DR, Qi Z, Reeves RH, Roder J, Rosen GD, Schadt EE, Schalkwyk LC, Seltzer Z, Shimomura K, Shou S, Sillanpää MJ, Siracusa LD, Snoeck HW, Spearow JL, Svenson K, Tarantino LM, Threadgill D, Toth LA, Valdar W, de Villena FP, Warden C, Whatley S, Williams RW, Wiltshire T, Yi N, Zhang D, Zhang M, Zou F; Complex Trait Consortium. Churchill GA, et al. Nat Genet. 2004 Nov;36(11):1133-7. doi: 10.1038/ng1104-1133. Nat Genet. 2004. PMID: 15514660
eae36, a locus on mouse chromosome 4, controls susceptibility to experimental allergic encephalomyelitis in older mice and mice immunized in the winter.
Teuscher C, Doerge RW, Fillmore PD, Blankenhorn EP. Teuscher C, et al. Genetics. 2006 Feb;172(2):1147-53. doi: 10.1534/genetics.105.049049. Epub 2005 Nov 19. Genetics. 2006. PMID: 16299394 Free PMC article.
Permutation tests for multiple loci affecting a quantitative character.
Doerge RW, Churchill GA. Doerge RW, et al. Genetics. 1996 Jan;142(1):285-94. Genetics. 1996. PMID: 8770605 Free PMC article.
QTL mapping in rice.
McCouch SR, Doerge RW. McCouch SR, et al. Trends Genet. 1995 Dec;11(12):482-7. doi: 10.1016/s0168-9525(00)89157-x. Trends Genet. 1995. PMID: 8533164 Review.
Testing for linkage: phase known/unknown.
Doerge RW. Doerge RW. J Hered. 1995 Jan-Feb;86(1):61-2. doi: 10.1093/oxfordjournals.jhered.a111528. J Hered. 1995. PMID: 7890929
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