Duchene S - Search Results

1

Phylodynamic Model Adequacy Using Posterior Predictive Simulations.

Duchene S, Bouckaert R, Duchene DA, Stadler T, Drummond AJ. Duchene S, et al. Among authors: duchene da. Syst Biol. 2019 Mar 1;68(2):358-364. doi: 10.1093/sysbio/syy048. Syst Biol. 2019. PMID: 29945220 Free PMC article.

2

Promiscuous evolution of Group A Streptococcal M and M-like proteins.

Frost HR, Guglielmini J, Duchêne S, Lacey JA, Sanderson-Smith M, Steer AC, Walker MJ, Botteaux A, Davies MR, Smeesters PR. Frost HR, et al. Among authors: duchene s. Microbiology (Reading). 2023 Jan;169(1):001280. doi: 10.1099/mic.0.001280. Microbiology (Reading). 2023. PMID: 36748538 Free PMC article.

3

The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia.

Porter AF, Featherstone L, Lane CR, Sherry NL, Nolan ML, Lister D, Seemann T, Duchene S, Howden BP. Porter AF, et al. Among authors: duchene s. Microb Genom. 2023 Aug;9(8):mgen001099. doi: 10.1099/mgen.0.001099. Microb Genom. 2023. PMID: 37650865 Free PMC article.

4

Simulating and detecting autocorrelation of molecular evolutionary rates among lineages.

Ho SY, Duchêne S, Duchêne D. Ho SY, et al. Among authors: duchene s, duchene d. Mol Ecol Resour. 2015 Jul;15(4):688-96. doi: 10.1111/1755-0998.12320. Epub 2014 Sep 12. Mol Ecol Resour. 2015. PMID: 25155426

5

Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences.

Duchêne D, Duchêne S, Ho SY. Duchêne D, et al. Among authors: duchene s. Mol Ecol Resour. 2015 Jul;15(4):785-94. doi: 10.1111/1755-0998.12352. Epub 2014 Dec 16. Mol Ecol Resour. 2015. PMID: 25431227

6

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data.

Duchêne S, Duchêne D, Holmes EC, Ho SY. Duchêne S, et al. Among authors: duchene d. Mol Biol Evol. 2015 Jul;32(7):1895-906. doi: 10.1093/molbev/msv056. Epub 2015 Mar 13. Mol Biol Evol. 2015. PMID: 25771196

7

Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations.

Duchêne DA, Duchêne S, Holmes EC, Ho SY. Duchêne DA, et al. Among authors: duchene s. Mol Biol Evol. 2015 Nov;32(11):2986-95. doi: 10.1093/molbev/msv154. Epub 2015 Jul 10. Mol Biol Evol. 2015. PMID: 26163668 Free PMC article.

8

Cross-validation to select Bayesian hierarchical models in phylogenetics.

Duchêne S, Duchêne DA, Di Giallonardo F, Eden JS, Geoghegan JL, Holt KE, Ho SY, Holmes EC. Duchêne S, et al. Among authors: duchene da. BMC Evol Biol. 2016 May 26;16(1):115. doi: 10.1186/s12862-016-0688-y. BMC Evol Biol. 2016. PMID: 27230264 Free PMC article.

9

New Statistical Criteria Detect Phylogenetic Bias Caused by Compositional Heterogeneity.

Duchêne DA, Duchêne S, Ho SYW. Duchêne DA, et al. Among authors: duchene s. Mol Biol Evol. 2017 Jun 1;34(6):1529-1534. doi: 10.1093/molbev/msx092. Mol Biol Evol. 2017. PMID: 28333201

10

Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families.

Duchêne DA, Bragg JG, Duchêne S, Neaves LE, Potter S, Moritz C, Johnson RN, Ho SYW, Eldridge MDB. Duchêne DA, et al. Among authors: duchene s. Syst Biol. 2018 May 1;67(3):400-412. doi: 10.1093/sysbio/syx076. Syst Biol. 2018. PMID: 29029231

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