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Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction.
Shapovalov M, Dunbrack RL Jr, Vucetic S. Shapovalov M, et al. Among authors: dunbrack rl jr. PLoS One. 2020 May 6;15(5):e0232528. doi: 10.1371/journal.pone.0232528. eCollection 2020. PLoS One. 2020. PMID: 32374785 Free PMC article.
ProtCID: a data resource for structural information on protein interactions.
Xu Q, Dunbrack RL Jr. Xu Q, et al. Among authors: dunbrack rl jr. Nat Commun. 2020 Feb 5;11(1):711. doi: 10.1038/s41467-020-14301-4. Nat Commun. 2020. PMID: 32024829 Free PMC article.
A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains.
Modi V, Dunbrack RL Jr. Modi V, et al. Among authors: dunbrack rl jr. Sci Rep. 2019 Dec 24;9(1):19790. doi: 10.1038/s41598-019-56499-4. Sci Rep. 2019. PMID: 31875044 Free PMC article.
Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency.
Kueppers F, Andrake MD, Xu Q, Dunbrack RL Jr, Kim J, Sanders CL. Kueppers F, et al. Among authors: dunbrack rl jr. BMC Med Genet. 2019 Jul 15;20(1):125. doi: 10.1186/s12881-019-0852-5. BMC Med Genet. 2019. PMID: 31307431 Free PMC article.
Principles and characteristics of biological assemblies in experimentally determined protein structures.
Xu Q, Dunbrack RL Jr. Xu Q, et al. Among authors: dunbrack rl jr. Curr Opin Struct Biol. 2019 Apr;55:34-49. doi: 10.1016/j.sbi.2019.03.006. Epub 2019 Apr 6. Curr Opin Struct Biol. 2019. PMID: 30965224 Review.
Defining a new nomenclature for the structures of active and inactive kinases.
Modi V, Dunbrack RL Jr. Modi V, et al. Among authors: dunbrack rl jr. Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6818-6827. doi: 10.1073/pnas.1814279116. Epub 2019 Mar 13. Proc Natl Acad Sci U S A. 2019. PMID: 30867294 Free PMC article.
A new clustering and nomenclature for beta turns derived from high-resolution protein structures.
Shapovalov M, Vucetic S, Dunbrack RL Jr. Shapovalov M, et al. Among authors: dunbrack rl jr. PLoS Comput Biol. 2019 Mar 7;15(3):e1006844. doi: 10.1371/journal.pcbi.1006844. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30845191 Free PMC article.
Interaction of germline variants in a family with a history of early-onset clear cell renal cell carcinoma.
Nicolas E, Demidova EV, Iqbal W, Serebriiskii IG, Vlasenkova R, Ghatalia P, Zhou Y, Rainey K, Forman AF, Dunbrack RL Jr, Golemis EA, Hall MJ, Daly MB, Arora S. Nicolas E, et al. Among authors: dunbrack rl jr. Mol Genet Genomic Med. 2019 Mar;7(3):e556. doi: 10.1002/mgg3.556. Epub 2019 Jan 24. Mol Genet Genomic Med. 2019. PMID: 30680959 Free PMC article.
Mouse modeling and structural analysis of the p.G307S mutation in human cystathionine β-synthase (CBS) reveal effects on CBS activity but not stability.
Gupta S, Kelow S, Wang L, Andrake MD, Dunbrack RL Jr, Kruger WD. Gupta S, et al. Among authors: dunbrack rl jr. J Biol Chem. 2018 Sep 7;293(36):13921-13931. doi: 10.1074/jbc.RA118.002164. Epub 2018 Jul 20. J Biol Chem. 2018. PMID: 30030379 Free PMC article.
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.
Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL Jr. Adolf-Bryfogle J, et al. Among authors: dunbrack rl jr. PLoS Comput Biol. 2018 Apr 27;14(4):e1006112. doi: 10.1371/journal.pcbi.1006112. eCollection 2018 Apr. PLoS Comput Biol. 2018. PMID: 29702641 Free PMC article.
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