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Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction.
BMC Syst Biol. 2014 Apr 3;8:41. doi: 10.1186/1752-0509-8-41.
BMC Syst Biol. 2014.
PMID: 24708835
Free PMC article.
Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism.
Elsemman IE, Mardinoglu A, Shoaie S, Soliman TH, Nielsen J.
Elsemman IE, et al.
Mol Biosyst. 2016 Apr 26;12(5):1496-506. doi: 10.1039/c5mb00827a.
Mol Biosyst. 2016.
PMID: 27040643
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Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints.
Li F, Chen Y, Qi Q, Wang Y, Yuan L, Huang M, Elsemman IE, Feizi A, Kerkhoven EJ, Nielsen J.
Li F, et al.
Nat Commun. 2022 May 27;13(1):2969. doi: 10.1038/s41467-022-30689-7.
Nat Commun. 2022.
PMID: 35624178
Free PMC article.
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Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast.
Lahtvee PJ, Sánchez BJ, Smialowska A, Kasvandik S, Elsemman IE, Gatto F, Nielsen J.
Lahtvee PJ, et al.
Cell Syst. 2017 May 24;4(5):495-504.e5. doi: 10.1016/j.cels.2017.03.003. Epub 2017 Mar 29.
Cell Syst. 2017.
PMID: 28365149
Free article.
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Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies.
Elsemman IE, Rodriguez Prado A, Grigaitis P, Garcia Albornoz M, Harman V, Holman SW, van Heerden J, Bruggeman FJ, Bisschops MMM, Sonnenschein N, Hubbard S, Beynon R, Daran-Lapujade P, Nielsen J, Teusink B.
Elsemman IE, et al.
Nat Commun. 2022 Feb 10;13(1):801. doi: 10.1038/s41467-022-28467-6.
Nat Commun. 2022.
PMID: 35145105
Free PMC article.
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Constraint-based models for dominating protein interaction networks.
Alofairi AA, Mabrouk E, Elsemman IE.
Alofairi AA, et al.
IET Syst Biol. 2021 Jul;15(5):148-162. doi: 10.1049/syb2.12021. Epub 2021 May 28.
IET Syst Biol. 2021.
PMID: 34048146
Free PMC article.
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