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Graph-based sampling for approximating global helical topologies of RNA.
Kim N, Laing C, Elmetwaly S, Jung S, Curuksu J, Schlick T. Kim N, et al. Among authors: elmetwaly s. Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4079-84. doi: 10.1073/pnas.1318893111. Epub 2014 Mar 3. Proc Natl Acad Sci U S A. 2014. PMID: 24591615 Free PMC article.
RAG: an update to the RNA-As-Graphs resource.
Izzo JA, Kim N, Elmetwaly S, Schlick T. Izzo JA, et al. Among authors: elmetwaly s. BMC Bioinformatics. 2011 May 31;12:219. doi: 10.1186/1471-2105-12-219. BMC Bioinformatics. 2011. PMID: 21627789 Free PMC article.
Predicting helical topologies in RNA junctions as tree graphs.
Laing C, Jung S, Kim N, Elmetwaly S, Zahran M, Schlick T. Laing C, et al. Among authors: elmetwaly s. PLoS One. 2013 Aug 26;8(8):e71947. doi: 10.1371/journal.pone.0071947. eCollection 2013. PLoS One. 2013. PMID: 23991010 Free PMC article.
RAG-3D: a search tool for RNA 3D substructures.
Zahran M, Sevim Bayrak C, Elmetwaly S, Schlick T. Zahran M, et al. Among authors: elmetwaly s. Nucleic Acids Res. 2015 Oct 30;43(19):9474-88. doi: 10.1093/nar/gkv823. Epub 2015 Aug 24. Nucleic Acids Res. 2015. PMID: 26304547 Free PMC article.
RAG-Web: RNA structure prediction/design using RNA-As-Graphs.
Meng G, Tariq M, Jain S, Elmetwaly S, Schlick T. Meng G, et al. Among authors: elmetwaly s. Bioinformatics. 2020 Jan 15;36(2):647-648. doi: 10.1093/bioinformatics/btz611. Bioinformatics. 2020. PMID: 31373604 Free PMC article.
13 results