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MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus.
Ewing G, Hermisson J. Ewing G, et al. Bioinformatics. 2010 Aug 15;26(16):2064-5. doi: 10.1093/bioinformatics/btq322. Epub 2010 Jun 30. Bioinformatics. 2010. PMID: 20591904 Free PMC article.
The program includes the functionality of the simulator ms to model population structure and demography, but adds a model for deme- and time-dependent selection using forward simulations. The program can be used, e.g. to study hard and soft selective sweeps in structured p …
The program includes the functionality of the simulator ms to model population structure and demography, but adds a model for deme- and time …
Rooted triple consensus and anomalous gene trees.
Ewing GB, Ebersberger I, Schmidt HA, von Haeseler A. Ewing GB, et al. BMC Evol Biol. 2008 Apr 25;8:118. doi: 10.1186/1471-2148-8-118. BMC Evol Biol. 2008. PMID: 18439266 Free PMC article.
Inferring the age of a fixed beneficial allele.
Ormond L, Foll M, Ewing GB, Pfeifer SP, Jensen JD. Ormond L, et al. Mol Ecol. 2016 Jan;25(1):157-69. doi: 10.1111/mec.13478. Epub 2015 Dec 24. Mol Ecol. 2016. PMID: 26576754
Influenza virus drug resistance: a time-sampled population genetics perspective.
Foll M, Poh YP, Renzette N, Ferrer-Admetlla A, Bank C, Shim H, Malaspinas AS, Ewing G, Liu P, Wegmann D, Caffrey DR, Zeldovich KB, Bolon DN, Wang JP, Kowalik TF, Schiffer CA, Finberg RW, Jensen JD. Foll M, et al. Among authors: ewing g. PLoS Genet. 2014 Feb 27;10(2):e1004185. doi: 10.1371/journal.pgen.1004185. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24586206 Free PMC article.
185 results