Fan JB - Search Results

1

Preprocessing and Quality Control Strategies for Illumina DASL Assay-Based Brain Gene Expression Studies with Semi-Degraded Samples.

Chow ML, Winn ME, Li HR, April C, Wynshaw-Boris A, Fan JB, Fu XD, Courchesne E, Schork NJ. Chow ML, et al. Among authors: fan jb. Front Genet. 2012 Feb 24;3:11. doi: 10.3389/fgene.2012.00011. eCollection 2012. Front Genet. 2012. PMID: 22375143 Free PMC article.

2

Profiling alternative splicing on fiber-optic arrays.

Yeakley JM, Fan JB, Doucet D, Luo L, Wickham E, Ye Z, Chee MS, Fu XD. Yeakley JM, et al. Among authors: fan jb. Nat Biotechnol. 2002 Apr;20(4):353-8. doi: 10.1038/nbt0402-353. Nat Biotechnol. 2002. PMID: 11923840

3

A versatile assay for high-throughput gene expression profiling on universal array matrices.

Fan JB, Yeakley JM, Bibikova M, Chudin E, Wickham E, Chen J, Doucet D, Rigault P, Zhang B, Shen R, McBride C, Li HR, Fu XD, Oliphant A, Barker DL, Chee MS. Fan JB, et al. Genome Res. 2004 May;14(5):878-85. doi: 10.1101/gr.2167504. Genome Res. 2004. PMID: 15123585 Free PMC article.

4

Profiling alternatively spliced mRNA isoforms for prostate cancer classification.

Zhang C, Li HR, Fan JB, Wang-Rodriguez J, Downs T, Fu XD, Zhang MQ. Zhang C, et al. Among authors: fan jb. BMC Bioinformatics. 2006 Apr 11;7:202. doi: 10.1186/1471-2105-7-202. BMC Bioinformatics. 2006. PMID: 16608523 Free PMC article.

5

Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens.

Li HR, Wang-Rodriguez J, Nair TM, Yeakley JM, Kwon YS, Bibikova M, Zheng C, Zhou L, Zhang K, Downs T, Fu XD, Fan JB. Li HR, et al. Among authors: fan jb. Cancer Res. 2006 Apr 15;66(8):4079-88. doi: 10.1158/0008-5472.CAN-05-4264. Cancer Res. 2006. PMID: 16618727

6

Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters.

Kwon YS, Garcia-Bassets I, Hutt KR, Cheng CS, Jin M, Liu D, Benner C, Wang D, Ye Z, Bibikova M, Fan JB, Duan L, Glass CK, Rosenfeld MG, Fu XD. Kwon YS, et al. Among authors: fan jb. Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4852-7. doi: 10.1073/pnas.0700715104. Epub 2007 Mar 14. Proc Natl Acad Sci U S A. 2007. PMID: 17360330 Free PMC article.

7

Analysis of gene expression in stage I serous tumors identifies critical pathways altered in ovarian cancer.

Chien J, Fan JB, Bell DA, April C, Klotzle B, Ota T, Lingle WL, Gonzalez Bosquet J, Shridhar V, Hartmann LC. Chien J, et al. Among authors: fan jb. Gynecol Oncol. 2009 Jul;114(1):3-11. doi: 10.1016/j.ygyno.2009.04.002. Epub 2009 May 1. Gynecol Oncol. 2009. PMID: 19410283

8

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB. April C, et al. Among authors: fan jb. PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162. PLoS One. 2009. PMID: 19997620 Free PMC article.

9

Expression profiling of formalin-fixed paraffin-embedded primary breast tumors using cancer-specific and whole genome gene panels on the DASL® platform.

Reinholz MM, Eckel-Passow JE, Anderson SK, Asmann YW, Zschunke MA, Oberg AL, McCullough AE, Dueck AC, Chen B, April CS, Wickham-Garcia E, Jenkins RB, Cunningham JM, Jen J, Perez EA, Fan JB, Lingle WL. Reinholz MM, et al. Among authors: fan jb. BMC Med Genomics. 2010 Dec 20;3:60. doi: 10.1186/1755-8794-3-60. BMC Med Genomics. 2010. PMID: 21172013 Free PMC article.

10

Gene expression profiling of human whole blood samples with the Illumina WG-DASL assay.

Winn ME, Shaw M, April C, Klotzle B, Fan JB, Murray SS, Schork NJ. Winn ME, et al. Among authors: fan jb. BMC Genomics. 2011 Aug 15;12:412. doi: 10.1186/1471-2164-12-412. BMC Genomics. 2011. PMID: 21843359 Free PMC article.

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