Fang X - Search Results

1

Adaptive laboratory evolution of Escherichia coli under acid stress.

Du B, Olson CA, Sastry AV, Fang X, Phaneuf PV, Chen K, Wu M, Szubin R, Xu S, Gao Y, Hefner Y, Feist AM, Palsson BO. Du B, et al. Among authors: fang x. Microbiology (Reading). 2020 Feb;166(2):141-148. doi: 10.1099/mic.0.000867. Epub 2019 Oct 18. Microbiology (Reading). 2020. PMID: 31625833 Free PMC article.

2

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.

Du B, Yang L, Lloyd CJ, Fang X, Palsson BO. Du B, et al. Among authors: fang x. PLoS Comput Biol. 2019 Dec 6;15(12):e1007525. doi: 10.1371/journal.pcbi.1007525. eCollection 2019 Dec. PLoS Comput Biol. 2019. PMID: 31809503 Free PMC article.

3

Reconstructing organisms in silico: genome-scale models and their emerging applications.

Fang X, Lloyd CJ, Palsson BO. Fang X, et al. Nat Rev Microbiol. 2020 Dec;18(12):731-743. doi: 10.1038/s41579-020-00440-4. Epub 2020 Sep 21. Nat Rev Microbiol. 2020. PMID: 32958892 Free PMC article. Review.

4

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655.

Gao Y, Yurkovich JT, Seo SW, Kabimoldayev I, Dräger A, Chen K, Sastry AV, Fang X, Mih N, Yang L, Eichner J, Cho BK, Kim D, Palsson BO. Gao Y, et al. Among authors: fang x. Nucleic Acids Res. 2018 Nov 16;46(20):10682-10696. doi: 10.1093/nar/gky752. Nucleic Acids Res. 2018. PMID: 30137486 Free PMC article.

5

Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient.

Fang X, Monk JM, Nurk S, Akseshina M, Zhu Q, Gemmell C, Gianetto-Hill C, Leung N, Szubin R, Sanders J, Beck PL, Li W, Sandborn WJ, Gray-Owen SD, Knight R, Allen-Vercoe E, Palsson BO, Smarr L. Fang X, et al. Front Microbiol. 2018 Oct 30;9:2559. doi: 10.3389/fmicb.2018.02559. eCollection 2018. Front Microbiol. 2018. PMID: 30425690 Free PMC article.

6

Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes.

Mih N, Monk JM, Fang X, Catoiu E, Heckmann D, Yang L, Palsson BO. Mih N, et al. Among authors: fang x. BMC Bioinformatics. 2020 Apr 29;21(1):162. doi: 10.1186/s12859-020-3505-y. BMC Bioinformatics. 2020. PMID: 32349661 Free PMC article.

7

Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities.

Fang X, Sastry A, Mih N, Kim D, Tan J, Yurkovich JT, Lloyd CJ, Gao Y, Yang L, Palsson BO. Fang X, et al. Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10286-10291. doi: 10.1073/pnas.1702581114. Epub 2017 Sep 5. Proc Natl Acad Sci U S A. 2017. PMID: 28874552 Free PMC article.

8

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.

Fang X, Monk JM, Mih N, Du B, Sastry AV, Kavvas E, Seif Y, Smarr L, Palsson BO. Fang X, et al. BMC Syst Biol. 2018 Jun 11;12(1):66. doi: 10.1186/s12918-018-0587-5. BMC Syst Biol. 2018. PMID: 29890970 Free PMC article.

9

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.

Santos-Zavaleta A, Sánchez-Pérez M, Salgado H, Velázquez-Ramírez DA, Gama-Castro S, Tierrafría VH, Busby SJW, Aquino P, Fang X, Palsson BO, Galagan JE, Collado-Vides J. Santos-Zavaleta A, et al. Among authors: fang x. BMC Biol. 2018 Aug 16;16(1):91. doi: 10.1186/s12915-018-0555-y. BMC Biol. 2018. PMID: 30115066 Free PMC article.

10

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits.

Seif Y, Kavvas E, Lachance JC, Yurkovich JT, Nuccio SP, Fang X, Catoiu E, Raffatellu M, Palsson BO, Monk JM. Seif Y, et al. Among authors: fang x. Nat Commun. 2018 Sep 14;9(1):3771. doi: 10.1038/s41467-018-06112-5. Nat Commun. 2018. PMID: 30218022 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

9,319 results

Search Page