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Profiling novel lateral gene transfer events in the human microbiome.
Hsu TY, Nzabarushimana E, Wong D, Luo C, Beiko RG, Langille M, Huttenhower C, Nguyen LH, Franzosa EA. Hsu TY, et al. Among authors: franzosa ea. bioRxiv [Preprint]. 2023 Aug 14:2023.08.08.552500. doi: 10.1101/2023.08.08.552500. bioRxiv. 2023. PMID: 37609252 Free PMC article. Preprint.
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease.
Mehta RS, Mayers JR, Zhang Y, Bhosle A, Glasser NR, Nguyen LH, Ma W, Bae S, Branck T, Song K, Sebastian L, Pacheco JA, Seo HS, Clish C, Dhe-Paganon S, Ananthakrishnan AN, Franzosa EA, Balskus EP, Chan AT, Huttenhower C. Mehta RS, et al. Among authors: franzosa ea. Nat Med. 2023 Mar;29(3):700-709. doi: 10.1038/s41591-023-02217-7. Epub 2023 Feb 23. Nat Med. 2023. PMID: 36823301 Free PMC article.
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4.
Blanco-Míguez A, Beghini F, Cumbo F, McIver LJ, Thompson KN, Zolfo M, Manghi P, Dubois L, Huang KD, Thomas AM, Nickols WA, Piccinno G, Piperni E, Punčochář M, Valles-Colomer M, Tett A, Giordano F, Davies R, Wolf J, Berry SE, Spector TD, Franzosa EA, Pasolli E, Asnicar F, Huttenhower C, Segata N. Blanco-Míguez A, et al. Among authors: franzosa ea. Nat Biotechnol. 2023 Nov;41(11):1633-1644. doi: 10.1038/s41587-023-01688-w. Epub 2023 Feb 23. Nat Biotechnol. 2023. PMID: 36823356 Free PMC article.
Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples.
Zolfo M, Silverj A, Blanco-Míguez A, Manghi P, Rota-Stabelli O, Heidrich V, Jensen J, Maharjan S, Franzosa E, Menni C, Visconti A, Pinto F, Ciciani M, Huttenhower C, Cereseto A, Asnicar F, Kitano H, Yamada T, Segata N. Zolfo M, et al. bioRxiv [Preprint]. 2024 Feb 19:2024.02.19.580813. doi: 10.1101/2024.02.19.580813. bioRxiv. 2024. PMID: 38464031 Free PMC article. Preprint.
Protein evolution in yeast transcription factor subnetworks.
Wang Y, Franzosa EA, Zhang XS, Xia Y. Wang Y, et al. Among authors: franzosa ea. Nucleic Acids Res. 2010 Oct;38(18):5959-69. doi: 10.1093/nar/gkq353. Epub 2010 May 13. Nucleic Acids Res. 2010. PMID: 20466810 Free PMC article.
82 results