Gifford DK - Search Results

1

Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast.

Bumgarner SL, Dowell RD, Grisafi P, Gifford DK, Fink GR. Bumgarner SL, et al. Among authors: gifford dk. Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18321-6. doi: 10.1073/pnas.0909641106. Epub 2009 Sep 30. Proc Natl Acad Sci U S A. 2009. PMID: 19805129 Free PMC article.

2

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes.

Bar-Joseph Z, Gerber G, Simon I, Gifford DK, Jaakkola TS. Bar-Joseph Z, et al. Among authors: gifford dk. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10146-51. doi: 10.1073/pnas.1732547100. Epub 2003 Aug 21. Proc Natl Acad Sci U S A. 2003. PMID: 12934016 Free PMC article.

3

Global position and recruitment of HATs and HDACs in the yeast genome.

Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford DK, Young RA. Robert F, et al. Among authors: gifford dk. Mol Cell. 2004 Oct 22;16(2):199-209. doi: 10.1016/j.molcel.2004.09.021. Mol Cell. 2004. PMID: 15494307 Free PMC article.

4

Genome-wide map of nucleosome acetylation and methylation in yeast.

Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA. Pokholok DK, et al. Among authors: gifford dk. Cell. 2005 Aug 26;122(4):517-27. doi: 10.1016/j.cell.2005.06.026. Cell. 2005. PMID: 16122420 Free article.

5

Coordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide.

Schreiber J, Jenner RG, Murray HL, Gerber GK, Gifford DK, Young RA. Schreiber J, et al. Among authors: gifford dk. Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5899-904. doi: 10.1073/pnas.0510996103. Epub 2006 Apr 4. Proc Natl Acad Sci U S A. 2006. PMID: 16595631 Free PMC article.

6

Core transcriptional regulatory circuitry in human hepatocytes.

Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA. Odom DT, et al. Among authors: gifford dk. Mol Syst Biol. 2006;2:2006.0017. doi: 10.1038/msb4100059. Epub 2006 May 2. Mol Syst Biol. 2006. PMID: 16738562 Free PMC article.

7

High-resolution computational models of genome binding events.

Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Qi Y, et al. Among authors: gifford dk. Nat Biotechnol. 2006 Aug;24(8):963-70. doi: 10.1038/nbt1233. Nat Biotechnol. 2006. PMID: 16900145

8

Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E. Odom DT, et al. Among authors: gifford dk. Nat Genet. 2007 Jun;39(6):730-2. doi: 10.1038/ng2047. Epub 2007 May 21. Nat Genet. 2007. PMID: 17529977 Free PMC article.

9

Automated discovery of functional generality of human gene expression programs.

Gerber GK, Dowell RD, Jaakkola TS, Gifford DK. Gerber GK, et al. Among authors: gifford dk. PLoS Comput Biol. 2007 Aug;3(8):e148. doi: 10.1371/journal.pcbi.0030148. Epub 2007 Jun 13. PLoS Comput Biol. 2007. PMID: 17696603 Free PMC article.

10

Feed-forward regulation of a cell fate determinant by an RNA-binding protein generates asymmetry in yeast.

Wolf JJ, Dowell RD, Mahony S, Rabani M, Gifford DK, Fink GR. Wolf JJ, et al. Among authors: gifford dk. Genetics. 2010 Jun;185(2):513-22. doi: 10.1534/genetics.110.113944. Epub 2010 Apr 9. Genetics. 2010. PMID: 20382833 Free PMC article.

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